- Probe CUST_19477_PI390587928
- Source Contig U35_10174
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19477_PI390587928 | Hv_44K_v2 | ACCAGATCGATTTTGTCAAGGCATAGGTCAAAACCTCGGGTGTACATCGGTTGCATGAAA | 726 | GeneList: lightcyan MasterList: Transferase_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.748 | 1.419 | 3.029 | 2.180 | 0.538 | 0.466 |
| Raw | 13.606 | 43.628 | 77.343 | 89.032 | 6.489 | 6.464 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12515.5 | 1560 | 2e-24 | 812 - 871 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_12515.2 | 1513 | 2e-24 | 943 - 1002 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_12515.1 | 1516 | 2e-24 | 782 - 841 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_12515.8 | 1271 | 2e-24 | 732 - 791 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_12515.3 | 1303 | 2e-24 | 767 - 826 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_12515.9 | 1259 | 2e-24 | 634 - 693 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_12515.7 | 1515 | 2e-24 | 890 - 949 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_12515.6 | 1334 | 2e-24 | 965 - 1024 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_12515.4 | 1731 | 2e-24 | 813 - 872 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_8396.4 | 2116 | 8e-25 | 846 - 905 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8396.3 | 1632 | 8e-25 | 744 - 803 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8396.2 | 2045 | 8e-25 | 775 - 834 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8396.1 | 1663 | 8e-25 | 775 - 834 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_10174 | 845 | 3e-25 | 727 - 786 | 100 | 60 / 60 | plus |
Contig Sequence (845 bp)
>U35_10174 845 Hv_44K_v2 CCGTTCGAACTAGGAATCCGAGGTGAGCACGGGCAAAGCGATGGCCGCGGCCAGGCCGCA CCACAGGGCGCCACCGGGCCGCGTGCCCACGAGGTGCGTCGCTGCGCTCTGCACCGCCTG CTTCCTCCTCGGCGTCTGCGTTGTTAACCGCTACTGGGCGGTTCCCGAGCCACCCGACTG CCCAAGCAAGGCGAATTTTGGCCGCTCGAGGGCCGTGCTGAGCCAAGCACAAACCCGCGA AGTCGTCATCGCGTTGGACAGGACGATATCGGACATCGAGATGCGCCTGGCTGCCGCTAG GGCCGCGCAGATGAGGAGCCAAGGCGCGTCGCCGAGTGATTCAGCCGCTGACCATGGAAA CATGCGACCTAGACTGCTTTTCGTCATGGGCATCATGACCACGTTCGACAATCGGAGGCG CAGAGACTCTCTCAGGAAGACGTGGGTGCCACAAGGTGAGCGTTTGCGAAGGCTGGAGAA AGACAAGGGCATTGCCATGCGTTTTGTTATTGGACGAAGTGCAAATCCTGGTCCTGGCAG TGAAGTGGAGCGTGCCATGGATGCAGAAGATAAAGAATACAACGATATTCTTAGACTTAA TCACGTTGAAGGCCAGGATGGGCTTCCTTTGAAGATTCAGATGTTTCTTTCAACTGCTCT GTCCACGTGGGATGCTGATTTCTATGTCAAAGTTGACGATGATGTTCACGTCAACATTGG TAGGTTACCAGATCGATTTTGTCAAGGCATAGGTCAAAACCTCGGGTGTACATCGGTTGC ATGAAATCCGGACCTGTGATTGCTAANCATGCATCTAAGTATTACGAACCAGATCATTGG AAGTT
Homology of Contig U35_10174 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g02370.1 | 389 | 2e-102 | protein|galactosyltransferase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g13770.1 | 386 | 3e-100 | |
| Arabidopsis v10 | AT1G32930.1 | 399 | 4e-59 | Galactosyltransferase family protein | chr1:11931980-11934399 REVERSE LENGTH=399 |