barSeed - Barley Seed Development Database

Probe CUST_19474_PI390587928

Source Contig U35_10176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19474_PI390587928	Hv_44K_v2	TCTCGAATCTCCATTAACGCGAAGGTTAATCGAGCGGAGGAGCAGGATGGACAGCCCCCT	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52549.2	1580	2e-24	82 - 141	100	60 / 60	plus	ABC24660
MLOC	MLOC_52549.1	2186	2e-24	82 - 141	100	60 / 60	plus	ABC24660
MLOC	MLOC_52549.3	4840	2e-24	36 - 95	100	60 / 60	plus	ABC04072 ABC24660
MLOC	MLOC_52549.4	5401	2e-24	16 - 75	100	60 / 60	plus	ABC04072 ABC24660
Harvest35	U35_10176	498	3e-25	11 - 70	100	60 / 60	plus

Contig Sequence (498 bp)

>U35_10176 498 Hv_44K_v2
CCCTAAACCGTCTCGAATCTCCATTAACGCGAAGGTTAATCGAGCGGAGGAGCAGGATGG
ACAGCCCCCTCCCGCAGCCGCGCAGGGCCGCCGTCCTGATCGCCGCCTGCGCGCTGATCC
TCCTCGCCACGGCCCTCCTCCTCCCGCGCGCTCCCCTCGCCCCGCCGCTGACCCCGGCCA
TCCGCCTCGACCCGCGGGTCGTGCGCAGGAGCGGCAACGAGGTGCTGTGGCAGCTGCCGC
CGGGCCCGCCGCGCGCCGCCGTGTTCGTCGCTCCCGGATGCACCATCCGCGCCACCGACT
TCTTCGACGCCTCCCCTGGCTGCCCGCGCTGCGCGGGGCTCCCCGAGGAGCGCCGGTTCA
CGCGCGAGGCGCTCCGCCGAGGCTACGCCGTCCTCGCCGTGTCCAGCCGCGCCGAGTGCT
GGTCCCTCGACGCCGCCTCCGGCGACGGCAGTGAGCTCGCCGCCGTCGGCTCCATCATCG
AATGGTGGGCCAAGGAGG

Homology of Contig U35_10176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13650.1	353	6e-58	protein\|expressed protein
Brachypodium v1_2	Bradi3g08830.1	350	1e-53
Arabidopsis v10	None