barSeed - Barley Seed Development Database

Probe CUST_19468_PI390587928

Source Contig U35_10179

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19468_PI390587928	Hv_44K_v2	TTATGCCAATGGAGGAGGCTTTGAAGATTCGGATATGAGCTTCGGTACAGACAAGCAGAT	406	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11568.4	2316	2e-24	1686 - 1745	100	60 / 60	minus	ABC14056
MLOC	MLOC_11568.3	2336	2e-24	1719 - 1778	100	60 / 60	minus	ABC14056
MLOC	MLOC_11568.5	2281	2e-24	1581 - 1640	100	60 / 60	minus	ABC14056
MLOC	MLOC_11568.1	2776	2e-24	2138 - 2197	100	60 / 60	minus	ABC14056
JLOC1	JLOC1_7671.2	2801	8e-25	572 - 631	100	60 / 60	plus
JLOC1	JLOC1_7671.1	2378	8e-25	149 - 208	100	60 / 60	plus
Harvest21	ABC19260	469	3e-25	407 - 466	100	60 / 60	plus
Harvest35	U35_10179	471	3e-25	407 - 466	100	60 / 60	plus

Contig Sequence (471 bp)

>U35_10179 471 Hv_44K_v2
CCCTGCTCCTCCCCGCTCCTCCCCATTTCCTGCCTTCCTTGCTCCCCAGTCCACCGGGCA
GCACCGGCAGCCCGAGCCCTACCTCGCCGGTGGCTATGAACGCGAGCGGGCGCCGGCGCT
ACACCTCGGAGCAGCTCCTCTTCGATGTCCCCTCCAATGCCGGGACGGCTGGCGGTGCCG
GCAGGTGGACCCAGCGCGGCGGCCTGCGCCGCGGGGACGGGGAGATCTTCGTGTCGGTGG
ACCCAGCGACGCCGGCACGGCTTCGCGGAGGGGACGCGGCGGCTGGGGAGTCTCCGGGGC
AGAGGCACCAGCTCAGCCCCGGGCTGCTCGATCTCCATGCCTTTGATACCGAGCTTATCC
CCGATTTTCAAGTACAAGGAATGTATGATGGTGCTGAAAAGTTTGGTTATGCCAATGGAG
GAGGCTTTGAAGATTCGGATATGAGCTTCGGTACAGACAAGCAGATGAGCA

Homology of Contig U35_10179 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43580.1	708	8e-58	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g44040.1	705	2e-64
Arabidopsis v10	None