barSeed - Barley Seed Development Database

Probe CUST_19461_PI390587928

Source Contig U35_22155

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19461_PI390587928	Hv_44K_v2	AATCCTTCCTGGGATTATTGCTGGGAAAAGGCCACTCTTTTCTGCTACCTTTGATCCATC	378	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361898	2571	2e-24	259 - 318	100	60 / 60	plus	ABC10502 ABC42630
MLOC	MLOC_59791.1	2561	2e-24	1743 - 1802	100	60 / 60	minus	ABC10502
JLOC1	JLOC1_38929.1	2534	8e-25	1728 - 1787	100	60 / 60	minus
Harvest21	ABC17207	907	3e-25	86 - 145	100	60 / 60	plus
Harvest35	U35_22155	1200	3e-25	379 - 438	100	60 / 60	plus

Contig Sequence (1200 bp)

>U35_22155 1200 Hv_44K_v2
AAAACCGTCCTGGATTCGCAGACGAATCTTTCTTTCTACCACCCCTGTTTACCTTACCAC
TGCTCCTAACACTACTAACCATGACAGTGAAAGCGTCCAACAAACCATGCTCGTTTTGCT
TGCACTCCCAACTCCCAAGCTCTCCAACCTCCAACCTCCAACCTCCAGGCGTGTGAGGCG
TGAACGAATGCCATATCCCGTGTAGAGGCATAGCATTGGCCAATCCATCACCAACTTTTA
TTGAGGTTCATGGAAATCTCGAGGTGACCGATCATGCCGCTTTGCTAGATGAGATCAAGC
AAACACCCAAATCCCTTTTCCAGCCCCACACTCAAATCACGTCTTTCCCTTCCCTTGACA
CAATCAACCTCCTTTGCAAATCCTTCCTGGGATTATTGCTGGGAAAAGGCCACTCTTTTC
TGCTACCTTTGATCCATCCCTCTGCGCTCTGCTCGCTGCCAGCTTTGGCAAACCCTTCAC
CATTATTGCCCTCTGCCACCCTCGCCTACTCTCCTGGGTAGTACTAGTACTCTACTTGCT
CGCCGTTAATGCCCGCCCTTTGCTCGCCATCCCTGGGAATCCCCCGTCGCGGTCGTCCGT
AGGTGGGGTTCGCCCGGGCTTCATTTATTGTCACCCCAAAAGATTCCAGCTCGTGGTCGC
GGGTGGAGCTCTGGTGGCTCGGGATTTTGAGAGCCTTCTTCTCGAGTTCTTGGAGCCTCC
CCTCTCTTTCCGGTGAGGGTTTCAGCTCCGAGCTTCGATTTCGGTGTGTTCTTGGAGGTT
CCCGACAAGATCCCCTCTTGTATCTGCTCGCCTGGTTGCTTCGTCCAAGATCTGAGCTCG
GAGCCCAAGATTTCATTTTCGAGCTGCTGCTGTTGGGCTCATCTGCTGCCTGTCCATGGG
TTCTCGTCCTCGGTCCGGCAGTGGGGGAGCCGCGGCGGCGCTCTTCGTGGCGGTGGCGGT
GGCGCTGGTGGTGGTCTCCTGGTCGGCGGCGGNGGTGGGCGCGATAGGTGCCAACTGGGG
CACGCAGGCGAGCCACCCGCTGCCGCCGGACACGGTGGTGAAGATGCTCAAGGACAACGG
GTTCCAGAAGGTGAAGCTGTTCGACGCCGAGGACGGCACCATGAGCGCCCTCAGGAAGAG
CGGCCTGGAGGTCATGGTCGGCATCCCCAACGAGCTGCTCATGAACATGGCCACCAGCAT

Homology of Contig U35_22155 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None