barSeed - Barley Seed Development Database

Probe CUST_19457_PI390587928

Source Contig U35_34131

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19457_PI390587928	Hv_44K_v2	CGTGAGTTGCAAGACATCTTTATGTGTGTGAATAAATGGCGAATATGCAAGTTGTTATTG	603	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251737.1	1875	7e-23	1754 - 1813	98	59 / 60	plus	ABC08927 ABC49850
MLOC	MLOC_1636.3	866	3e-21	89 - 148	97	58 / 60	minus	ABC08927 ABC49850
Harvest35	U35_34131	690	3e-25	604 - 663	100	60 / 60	plus
Harvest35	U35_1456	1835	1e-23	1700 - 1759	98	59 / 60	plus

Contig Sequence (690 bp)

>U35_34131 690 Hv_44K_v2
TCCAAGTGAACGACGTGATGATTATTAGTAGGAGAGTACCAAAGTTCAGAGACGAAGCCG
TGCTTCACGTTTCATTCATTTACAACTCATTACAACCCGTTTATTCGGACACGGCCTATT
CTCTTTATTCCAAGCTTCTAAACTGTGTTCCCTCTTCACTCGAACTTATACCTTTTATTA
GGACACGGCCTACTCCCTTTATTCCAAGCTTCTAAAACTGTCCTCCCTCTTCGTTCCATC
TTACACCTTACGCCTGCAGAGCTATCCGCGCTTATCAGCGTACTTGGCCCCGGTAGGTTC
TCGATCCTTCTTCATTCAGGTGGAAGCGAAGGCCAACTTCAAGCATCAACCCAGGTTGCC
AGCGGCCGCTGGACAGATTCGGGCTCTACCATGTCGACTTCAAGACGCAGAAGAGGATGC
CAAAACTATCGGCTGAATGGTTCAGGCAGTTCCTCAAAGGTTCACTTCTGACAAGAGAAC
TCCAAAATGGATCCCAGCTGCAGCTCTACCATACTTCCTGAGCTACTGATGGTTCTTCTC
CCCGTGCTTCAATGTCATGTAAAATCGTACCTTGTTTCCCTGTGCCTGAATACTATGCAA
GGTCGTGAGTTGCAAGACATCTTTATGTGTGTGAATAAATGGCGAATATGCAAGTTGTTA
TTGTAAGGATGTAGAGATATTTATGTTTGT

Homology of Contig U35_34131 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None