barSeed - Barley Seed Development Database

Probe CUST_19451_PI390587928

Source Contig U35_10182

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19451_PI390587928	Hv_44K_v2	ATCATCGAAAATACATACACTCTGTTCCAGGCTGTCTGTCGTGTACTAACTAAGGGATGG	651	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.832	1.718	1.127	0.803	0.310	0.302
Raw	1345.123	1980.000	1140.592	1282.739	175.157	183.375

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80996.2	2709	3e-21	2615 - 2674	97	59 / 61	plus	ABC21414
JLOC1	JLOC1_53902.1	2748	2e-21	2593 - 2652	97	59 / 61	plus
Harvest21	ABC21414	714	3e-25	652 - 711	100	60 / 60	plus	ABC21414
Harvest35	U35_10182	714	3e-25	652 - 711	100	60 / 60	plus

Contig Sequence (714 bp)

>U35_10182 714 Hv_44K_v2
TACCAGATCAACCAGGTCAACAGCTGGTTTTACTAGACCTTCTAAAGATGCTACTGGTGC
CGCTAAAGGTGGAGCTTCCAAAAGAGGCAGGGGGAAAGGCTCATTGAAACAAACCACTCT
TAGTTTCAGTCAATCAAGGTCAAGTGCTGCTATTCGCAGTGAGGATGTGGACTCTTCCTC
GGATGAGGATGCAGGGGACGGAGCAAATGAAGTTGTTGAAAATTCAGAACCTGAGGACAG
TTTCCCACAAAGTGGACGGAAGAGGCCGGCTCCTAGAGGTAGAGGTCGGGCCAGAGGCAC
TACCACCGCAAAAAGAGGGAGGAAAGCCGACACCGGTTCCATGCCGAGCATGGTGATGAG
CAAAGATGATGACAGCGACGAAGATGACAAGCCTAAGAAACCTCCGCCTCGGGCCACGAG
GAACTACGGAGCCGTCAAGAGGAGATGATTCTCGTTCTTGTGAAGCGATTTGGAGAATCA
AGGGCGGGGTTAGAATAGCTGGTGTGCTCCCATCAACCTGGCTGGCGGTCTGTTCGCAGT
GAACGACAAGTGGAAACTCGATTACACGTTCTCGTGTACCATGTAATTTATATGCTTGTA
GCTGCTAAACCCTGGTAGTACTAGTTTGCCAGTTTACCATTGGGAACTATTATCATCGAA
AATACATACACTCTGTTCCAGGCTGTCTGTCGTGTACTAACTAAGGGATGGGAA

Homology of Contig U35_10182 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None