barSeed - Barley Seed Development Database

Probe CUST_19447_PI390587928

Source Contig U35_10185

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19447_PI390587928	Hv_44K_v2	TGTTACTTTGAGCTGTGATTCATCTACCACACTTCATAGTGCCACTGCATGCATACCTCC	601	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.863	1.518	1.387	1.487	0.481	0.720
Raw	13.379	34.594	29.313	50.776	4.727	8.835

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53511.1	2761	2e-24	883 - 942	100	60 / 60	plus	ABC08732 ABC08733 ABC20722
JLOC1	JLOC1_34386.1	1946	8e-25	883 - 942	100	60 / 60	plus
Harvest21	ABC20908	816	3e-25	602 - 661	100	60 / 60	plus
Harvest21	ABC20722	1124	3e-25	181 - 240	100	60 / 60	plus	ABC20722
Harvest35	U35_10231	1124	3e-25	181 - 240	100	60 / 60	plus
Harvest35	U35_10185	817	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (817 bp)

>U35_10185 817 Hv_44K_v2
GGCGCGCGATGCTGCTGGGCGTGGAGAGGCGCCGCAAGGACGACGGCGTGGAGGGGCGGC
AGCAGGAGGAGGAGGAGGAGGAGGAGTACGGCGCGGTGCCCATGGCCTCCGTCAGATCCG
ACGACGACGCGCGCCGAGGAGGCAGCGTCTGCGAAGAATACAAGGACGTGGACGTGGTGA
GCACGATGTCGGGGTCTTCGTCCTCGCTGGACACCGGGAGCGGGCACCGGTCGCGGGACT
CCCACTCCATGGGCTCGAGGTTCAGGGTGCCCGAGGAGGACTCGTGCGATTCAGAGAGCG
TGGCGTCCAACTTCGAGTTCCATAAGGAGCGAGGGGCCTCCGCTCGGTCAGCGCCCACGG
CGGTGGTCGCACCGTTCTCCAAGCCCCCGCCGTCGAAGTGGGATGATGCCCAGAAATGGA
TCGCCAGCCCGGCGACGAACCGTCCTGGTAGGGCTGGTGGAGCTTTCCCAAGGAAGATGG
AGAAAACTGGCTTTGGTGGAGGGAGGCTGCCGCCGACGAAGGTTGTGCCGGAGCCCTATC
CAGAAGTGGAGCCTTGTGCAAAGTCTGCACCTGGTGCAGAAAGTACTATAATTGATTCAG
CTGTTACTTTGAGCTGTGATTCATCTACCACACTTCATAGTGCCACTGCATGCATACCTC
CCCCACCAACAGGCCGGTCAGTATCGATGAGGGACATGGGTACTGAAATGACCCCAATTG
CAAGCCAAGAACCATCCCGGACAGGAACACCTGTGAGAGCAACAAGCCCGGATTGCTCTC
GGCCAACTACTCCACGAAGGACATTGGGTATCAATGC

Homology of Contig U35_10185 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02500.1	511	5e-112	protein\|remorin family protein, putative, expressed
Brachypodium v1_2	Bradi3g01570.1	524	2e-107
Arabidopsis v10	None