barSeed - Barley Seed Development Database

Probe CUST_19440_PI390587928

Source Contig U35_46117

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19440_PI390587928	Hv_44K_v2	ATCAGCACGCTCTTCATCTTCGTCATGATAGCCAGCGCGCTCCTCGTCCGGCGGGACCAT	240	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.112	0.948	1.195	1.020	0.807	0.412
Raw	18.802	24.369	26.828	33.137	9.140	5.480

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357019	3460	7e-23	1358 - 1417	98	59 / 60	plus	ABC13844 ABC17852 ABC41122 ABC44969 ABC45733
MLOC	MLOC_53817.1	2371	7e-23	1685 - 1744	98	59 / 60	plus	ABC45733
JLOC1	JLOC1_34598.1	1893	4e-23	1096 - 1155	98	59 / 60	plus
Harvest21	ABC45732	308	3e-25	241 - 300	100	60 / 60	plus
Harvest35	U35_46117	308	3e-25	241 - 300	100	60 / 60	plus

Contig Sequence (308 bp)

>U35_46117 308 Hv_44K_v2
TGGATGCAGTACGTGGTGGCGGTGGGCGCACTCAAGGGGATGACGACGGTGCTATTAGTC
GGGGCACTGGGGAACGCGCGGTACGCGACCCACATCGCCCGCAGCCACATCATCCCGCCG
GTGTTCGCGCTGGTGCACCCGAAGACCGGCATGCCGGTGCACGCCACGGGGCTCATCACC
GCCGCCAGCGCCTGCGTCGCCTTCTTCTCCAGCCTCGACGTGCTCGCCAGCCTCCTCTCA
ATCAGCACGCTCTTCATCTTCGTCATGATAGCCAGCGCGCTCCTCGTCCGGCGGGACCAT
GCCAGGGG

Homology of Contig U35_46117 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g37460.1	621	2e-52
Arabidopsis v10	None