barSeed - Barley Seed Development Database

Probe CUST_19438_PI390587928

Source Contig U35_46118

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19438_PI390587928	Hv_44K_v2	GCTTCACAACGAATATGCAAAATTTACAGCAAAATAAGTAAGTGGCTACTACTTCATCCG	22	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357019	3460	2e-24	3332 - 3391	100	60 / 60	plus	ABC13844 ABC17852 ABC41122 ABC44969 ABC45733
JLOC1	JLOC1_34598.1	1893	8e-25	1736 - 1795	100	60 / 60	plus
Harvest21	ABC45733	656	3e-25	23 - 82	100	60 / 60	minus	ABC45733
Harvest35	U35_46118	656	3e-25	23 - 82	100	60 / 60	minus

Contig Sequence (656 bp)

>U35_46118 656 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAACGGATGAAGTAGTAGCCACTTACTTATTTTGCTGTAAA
TTTTGCATATTCGTTGTGAAGCAGTGCTATGTCTATGTCAAACAGTACATTCTCTATCAC
GGTGACCCAGATCGAGGCGGACCAAATCCAGCCACATCTTAGCGGCCAGCAGCTCCGACG
CCAGACTTCTCCACGTCGGTGGCAGCCTCCGCTCCCGCCGCCGCCGCCGCCGCCGCCTTC
TCATCAGCCGCAGCGTGGTCGCCGTAGCCCACCCCTTGCTCCTCCACCTCCTCGTGCGCG
ACGTCGTACGTCGCGTGCAAGCCGACGAGCACGTAGTAGAGCAACATGACGGCGGTGCAC
ACGCCGAAGCGAACGAACGCCTGCGCGCCGAGGGAGCCCATGAGGAAGATGTTCGTGGCG
ATGGAGAGCGAAGGCAGCCACGGCCCGAGCGGCACGCCCCATTGCCTGGGCGTGCGGGCC
ACGGGCACCAGCAGCTGGATGCCGAGCGTCGCCGCAGCCCACACCGGCACCAGGGCGGCG
TAGCCTTCCCACCGCTCCGGCGCCGCGCCCCAGCATGCCGCGATGCCCGCCGACGAGCCG
ATGACCCCCAGCACGAGCGCCGCGAGCCGCCGCGCGTGCGCCTGGCTCGTCACGCC

Homology of Contig U35_46118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g11160.1	617	3e-63	protein\|amino acid permease family protein, putative, expressed
Brachypodium v1_2	Bradi4g37460.1	621	2e-65
Arabidopsis v10	None