barSeed - Barley Seed Development Database

Probe CUST_19435_PI390587928

Source Contig U35_22162

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19435_PI390587928	Hv_44K_v2	GAATTCTTATGTAGCAGCTTGTACAAGAAAGCACATTCTGTATATGCCATCATTGTTTTG	1110	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.040	1.056	1.279	0.989	0.364	0.355
Raw	76.861	125.707	129.444	159.513	20.173	21.608

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC15539	1200	3e-25	1111 - 1170	100	60 / 60	plus	ABC15539
Harvest35	U35_22162	1200	3e-25	1111 - 1170	100	60 / 60	plus

Contig Sequence (1200 bp)

>U35_22162 1200 Hv_44K_v2
ATCGGAAATCGCAGCTTGTCGATCCTTCCAAGAAAAATTTATCCCATCGTTGTTCAGCAC
CTGGAATTACTCCACATCCCATGCGCTATCTGGGCTGCTCATATGGTTATCTTATCTTCT
CTGATAGGAGACACTGCCATCTCGTCGATGTGTACACTGGCACTAAGGTGAAGCCGCCAA
AATTCCATTCTGAGAGCAGCACTTTGATCTACCTTGGCATCCTTATGGCTCCACTGAATT
CGCCCAGTTCGCGTCTCATCCTTTTCTCGAGGATGTCCATGCTCCAGTGGCAGGTTGGAA
CAAATTTCTGGACAGAGCACCCTCTTGATGGTGAACTCATCCATCAGATTGTGTTCTTCA
AAGGCCAGATGTTCGCCATGGACTTTGTTCAAAGGCTACATACCATACGCATAGCACCTG
AGCTCAGCACGCAGGAAGTAGCAGTTATGTGGGAAGATAGCATGCTCGTGGGCCTGCATT
CTAAGCCATGGTTGGTGGTCTGTGGTGACATGCTTCTCTTGGTTGATCTCTCGGTAAGCA
TGGACCAACTGTTTGGCTTCCCTGGCACCTTTCAAGTCTTTTGCCTCAACTTCTCGGTCG
AACCAGCTAAGTGGGTAAAGATGGATAAGTTGGACAATTGGGCTCTCTTCCTCACCAATG
ATAGGAGAAACCCTACATTTTCTTGCATGAACCCCGAAAGATGGGGTGGAAAGAGTAACT
ATATTTACGTTCCAACAAAATCAGAAGATTTCGATGAACCATGGACTGCAATAGAGATTG
GACAGCCGGTGCCCAGCTCGACTCACCGTATGTCATTCAGTTCCGCAGCCACTGCCCATT
GCAGTCCACTAAATAGCCTCTGGGTGCTTCCCAGTTTGGTCTACGGGGTTGACCAATGAT
TGGTCATCGTTGCTTTTTGCAGTTGCAGGGCTTTTCTTAGTCTTTCACAATGCCAGTCCT
GTCGATTCCTGTTTTTATATTATTCAGCTAGCGACTATGTTCTGTAACTCCCATGGTTTC
TTGACTTGGCAAATGTATTGTGTACAAGAATATTTATCTATATTGTCTCCAGGAAGTGAT
CGTCCTGCACTGCCTCTATGAGGAATAATAGAATTCTTATGTAGCAGCTTGTACAAGAAA
GCACATTCTGTATATGCCATCATTGTTTTGATTTTCTTTTGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_22162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02100.1	436	6e-133	protein\|OsFBX181 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi1g50207.1	177	1e-106
Arabidopsis v10	None