barSeed - Barley Seed Development Database

Probe CUST_19434_PI390587928

Source Contig U35_22163

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19434_PI390587928	Hv_44K_v2	GAAACTTGTACATTGATTATTACCGGGCTGTAAACATTTGGTCATGAAACTGTTGTAAGG	1110	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.252	1.306	1.312	1.071	0.484	0.557
Raw	156.961	264.972	233.467	290.544	46.355	58.365

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366960	1208	2e-24	1068 - 1127	100	60 / 60	plus	ABC48054
MLOC	AK369641	1495	2e-24	1415 - 1474	100	60 / 60	plus	ABC48054
MLOC	MLOC_77291.1	2054	2e-24	360 - 419	100	60 / 60	plus	ABC48054
MLOC	MLOC_77291.2	2295	2e-24	601 - 660	100	60 / 60	plus	ABC48054
JLOC1	JLOC1_51548.2	2030	8e-25	360 - 419	100	60 / 60	plus
JLOC1	JLOC1_51548.1	2176	8e-25	506 - 565	100	60 / 60	plus
Harvest21	ABC48054	506	3e-25	426 - 485	100	60 / 60	plus	ABC48054
Harvest35	U35_22163	1191	3e-25	1111 - 1170	100	60 / 60	plus

Contig Sequence (1191 bp)

>U35_22163 1191 Hv_44K_v2
GCAACCAACTTCCCTGTCAATACTCCCTCCTCGTTTTTTCCTTATCCCCCCACACACGCA
GCGCACGGCGACGAAGCAGTCAGAACGCGGCGCCAGCGGCAGAAGAAGATTGGATTGGAT
AGCAGAGGCGAGGGCGAGCCCTCACCGTCGTCACCGCCGACAGGCTCGATGAGGAACCCG
CCCGGCCGGCACCTCCTGCGCGTCGCCACCCGCGCCGTGCGCTCCTCGTCCGGGCTCGGC
GGCTCCGGCTCCGGCGCCGGCGCCTCCACCTCCGCCACGTCCCCCGCGGCCGCCCCCTCC
GGTGGCCGCCAGCGCGGCGGAGGCATGCTCCTGCGGGCCACCTCGCCGCCCCCGCCCTCC
ACCGTCTCTGCCGCCGCGAGCTGGGAATCCCGCACCCTGCGCCGGGACGGGGAGGACGAC
TGGGAGGAGGTCGTCGCCGCGGCTCCGGGCGCCGGCGACGCCGAGGTGGACAGCGACTAC
AGGGGTGTTTGAGGGTTCTTATTATGATGTGGATTCAGATGAAACTCAGAAACAAATAGC
ATTGTTGTCAAACTCAGAGGATTCTTCGTCAAGCAATTCATCAGGATCAGATGATTGGGT
CGAACCTGCTGCATATGTTCTCAACTCAACTGCTCTTCTGACCAGGGAGCATAGGAATGT
TTTGGATGCCTTCCGTCTACTGCAAAGAGACCCTAATGTTCAGAAAATGGTTATGTCCTT
GTCATGTGATAGGACTGTATGGGATGCTGTAATGAATAACGAGGCAGTGCAAGAATTCAG
GAGATCTTTCCAGGATGGCAAAGAAGTTAATAGAAAGGGAAACCCTTGTGGTCCTGCTGC
AGTGCTTAAGTGGATCCTTGCCAACACCCAGGCAAAAATAACGGAATTCTTCGATAATAT
ATCGAAGATTGTCAGCATGCTCTTCCACCCTCAAAGCGAAGAAGATAAACCCGACCTGTA
CAACGATGCAGTGAAGGTGTCTTTCATGCTCTCGGTGTTTGTCTTCATCGTGGTGGCCGT
TGCTCGTACCAATTATGAGCCGTGGGATTTCGAAGTGCGGTGAATGCAAGATTTGTAGGA
CATCACAGGCCTCATGATTTACACGCACACGAAACTTGTACATTGATTATTACCGGGCTG
TAAACATTTGGTCATGAAACTGTTGTAAGGTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22163 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44010.1	328	5e-83	protein\|expressed protein
Brachypodium v1_2	Bradi3g50647.1	324	1e-96
Arabidopsis v10	None