barSeed - Barley Seed Development Database

Probe CUST_19431_PI390587928

Source Contig U35_22166

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19431_PI390587928	Hv_44K_v2	TTTGGCCAAAAGAGAAAGAGAAACCCAATCATTGTTACACCCGCGTGGTGTTACAGTGAA	1124	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360815	3267	2e-24	1188 - 1247	100	60 / 60	plus	ABC48259
MLOC	MLOC_53015.2	1750	2e-24	1021 - 1080	100	60 / 60	plus	None
MLOC	MLOC_53015.1	2181	2e-24	1021 - 1080	100	60 / 60	plus	None
JLOC1	JLOC1_34017.1	1722	8e-25	1023 - 1082	100	60 / 60	plus
Harvest21	ABC25037	1020	3e-25	949 - 1008	100	60 / 60	plus
Harvest35	U35_22166	1196	3e-25	1125 - 1184	100	60 / 60	plus

Contig Sequence (1196 bp)

>U35_22166 1196 Hv_44K_v2
AACCACAATGCCGGAACCGCAGGCCATCCTCCCGCTCCGCGCGCTGCCGCCGGACGCGCC
GCTCCCCTTCCCACCGCCGTTCCACCACCAGACCCCTACTACCCCAGCCGCTACGGCCAG
CGCCAGCGCCAGCGTCACCCCGACCCCTCCGCCGGCCACGCCCCCGAACCCGACCCCTCC
GCCGGCCACGCACCCCCACCCCTCGTCCTCCACGCGGCCGCCGCACCCATGGGAGATCGC
CGCGCGCGCCTGGCTCGAGTCCTTCCCCGATGGCCGCCCTCCCACCGAGCCCGAGGTCGA
CGCCTACATCGACGCCCACCGCCCCGAGCTCCCGTCCCTCCCCCGCTCCCAGCTCCACCA
GCGCCTCCTCGCGCTTCGGGGCGACCAGGTTTTAGATCCAGACCAAAGTGCATTCCCATA
CAGGTTCCAGCGAACCGATCTCTGGAAGCCTGTGTATCAGTGGTTGGAAACTCTTGAGAT
GGACTCGCTAGTTACATCAAAGCAGATATCGGACTGGCTTGCATCGAACCCACAGGTGAT
GGATAGGCTGGTTGAGAAGCATTCCAAGTATCATCTGATACACTACAGCCAGCGGATGCA
CTTGAAGTTGCTCAAGAAGAGAGGGAAGTTGCCAAAGACTCTACAACTTTCTGCGGCTAG
AGCCACATTCCAGTCAAGTGCTGTTCCAGTTACCCCACCAGAAAGTGTGGCGGCCTTACC
GAAATCTCTACCTCCGGTGACAGGTGGATTTCCAGGTGGCAGTGCAATCATATCTCCAGG
TGTCAGTGCAATCAGATCTCCAGGTGTCAGTGCAAGCAGACTTCCAGGTGGCAGTACACC
AATAAAGGACAAAAAAAATGTCTTTGACCAAAAAGAAAGAAGCTCTCTTCAAATATGAAC
TTTTGACAGATTTGCAGAATCAATTGACCAGTGTGATGTTAAAGAACTGTCGTACTGTCG
CCATTAAAGATACAGATTCACTGTATATGGATATTCAAAAGCCAGACACCAACATATTAT
GTATACAAGAAGGGGCAGCTACTGCAAGCACATCAAACCCTGCAGATGTGCCAAAGATTT
ATGTCAATGAACAGCCAAACGCAGGGGGAGTAGTGGAGAGTGAATTTGGCCAAAAGAGAA
AGAGAAACCCAATCATTGTTACACCCGCGTGGTGTTACAGTGAAGCTGCACAGGAA

Homology of Contig U35_22166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41900.1	893	2e-90	protein\|expressed protein
Brachypodium v1_2	Bradi3g41217.1	887	2e-99
Arabidopsis v10	None