barSeed - Barley Seed Development Database

Probe CUST_19429_PI390587928

Source Contig U35_36669

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19429_PI390587928	Hv_44K_v2	TTCTTCTAGACTGAATTTTGTAGTGGAGTTAATTAGGGATGTGCTATGGAACATGTTATC	611	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249800.1	955	2e-24	748 - 807	100	60 / 60	plus	ABC02100 ABC02103 ABC02106
MLOC	MLOC_44625.3	715	2e-24	70 - 129	100	60 / 60	minus	ABC02100 ABC02103 ABC02106
MLOC	MLOC_44625.2	2000	2e-24	438 - 497	100	60 / 60	minus	ABC02100 ABC02103 ABC02106
MLOC	MLOC_44625.1	2125	2e-24	442 - 501	100	60 / 60	minus	ABC02100 ABC02103 ABC02106
JLOC1	JLOC1_28932.1	1247	8e-25	706 - 765	100	60 / 60	plus
Harvest21	ABC31880	671	3e-25	612 - 671	100	60 / 60	plus
Harvest21	ABC02105	980	3e-25	755 - 814	100	60 / 60	plus
Harvest21	ABC02100	955	3e-25	727 - 786	100	60 / 60	plus	ABC02100
Harvest35	U35_36669	671	3e-25	612 - 671	100	60 / 60	plus
Harvest35	U35_14932	1010	3e-25	743 - 802	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_36669 671 Hv_44K_v2
GCTCCTCCCCCCTCCGCGCCGCCGCCGCCACCTCGCCCCAGCCCACCCCCTCACCGGCGA
AGATGAAGACCATCCTGGCGTCGGAGACGATGGACATCCCGGAGGAGGTGACGGTGAAGG
TGTCGGCCAAGATGATCTCGGTGACGGGGCCGCGCGGCACCCTGACCCGCACCGCCATCT
CCCACGTCCAGAACCTCATCACCGGCGTCACCAAGGGCTTCCGCTACAAGATGCGCTTCG
TCTACGCTCACTTCCCCATCAACGCCTCCATCACCGCCGCCAACCGGGGCATCGAGATCC
GCAACTTCCTCGGCGAGAAGAAGGTGAGGAAGGTGGACATGCTCGACGGGGTCACCATCT
TGCGGTCCGAGAAGGTCAAGGATGAGATCGTCCTCGACGGCAACGACATCGAGCTCGTCT
CCCGCTCCGCCGCCCTCATCAACCAGAAATGCCACGTCAAGAACAAGGATATCAGGAAGT
TCTTGGATGGTATCTACGTCAGCGACAAGGGCGCCATCAAGGAGGAGTAGAGTGCAAAAA
ATTGTCCCAGAAGCTGTGTTTCTGCCTCCGTGTTTCATCGTCTTTGTGTTGNCGTTGTCG
TGATTTTGAACTTCTTCTAGACTGAATTTTGTAGTGGAGTTAATTAGGGATGTGCTATGG
AACATGTTATC

Homology of Contig U35_36669 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31180.1	191	4e-84	protein\|ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi3g00640.1	190	1e-91
Arabidopsis v10	AT1G33140.1	194	6e-77	\| Symbols: PGY2 \| Ribosomal protein L6 family \| chr1:12023360-12024502 FORWARD LENGTH=194