- Probe CUST_19423_PI390587928
- Source Contig U35_24690
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_19423_PI390587928 | Hv_44K_v2 | GATGGCGGTATCTCAATCTTCTTATTGTAAACTTAAATTGTACCTTGGTCCGTTTGTAAT | 93 | GeneList: plum1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.193 | 0.264 | 0.355 | 1.839 | 2.639 | 2.576 |
Raw | 2.964 | 9.105 | 12.855 | 100.031 | 52.523 | 56.726 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK359845 | 1136 | 2e-24 | 1002 - 1061 | 100 | 60 / 60 | plus | ABC18766 |
MLOC | MLOC_1835.1 | 1020 | 2e-24 | 122 - 181 | 100 | 60 / 60 | minus | ABC18766 |
JLOC1 | JLOC1_1110.1 | 927 | 8e-25 | 840 - 899 | 100 | 60 / 60 | plus | |
Harvest21 | ABC18766 | 245 | 3e-25 | 94 - 153 | 100 | 60 / 60 | plus | ABC18766 |
Harvest35 | U35_24690 | 245 | 3e-25 | 94 - 153 | 100 | 60 / 60 | plus |
Contig Sequence (245 bp)
>U35_24690 245 Hv_44K_v2 CACGAGAGGGTCAGCTGGGTGAAATTTTTTCAAACGTAGTTCAGTTTGTGAAATACTTTG GCTCCTGGGTCAAATTTATCAATTTTGCTAAAGGATGGCGGTATCTCAATCTTCTTATTG TAAACTTAAATTGTACCTTGGTCCGTTTGTAATTTTCTTTCTTTCCGGGGTGAGTTGCAC TTGCACCACAACTTAATTTCAATATAAGTCTGCGGCCCTCTTCGCAAGAAAAAAAAAAAA AAAAA
Homology of Contig U35_24690 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |