- Probe CUST_19422_PI390587928
- Source Contig U35_24691
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19422_PI390587928 | Hv_44K_v2 | TGTTGAAGAAGAAAGAGTTAATGCCAATACGGAGGTAGAGAGTGCTAGGTCTGCAGTGCA | 576 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.935 | 2.463 | 0.776 | 0.479 | 0.853 | 0.798 |
| Raw | 91.127 | 69.785 | 20.289 | 18.744 | 11.595 | 12.310 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_15954.1 | 1255 | 2e-24 | 729 - 788 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_15954.3 | 1326 | 2e-24 | 702 - 761 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_15954.4 | 1924 | 2e-24 | 698 - 757 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_15954.2 | 2093 | 2e-24 | 725 - 784 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_10970.3 | 2082 | 8e-25 | 647 - 706 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10970.2 | 2053 | 8e-25 | 618 - 677 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10970.1 | 2167 | 8e-25 | 732 - 791 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20452 | 640 | 3e-25 | 577 - 636 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24691 | 640 | 3e-25 | 577 - 636 | 100 | 60 / 60 | plus |
Contig Sequence (640 bp)
>U35_24691 640 Hv_44K_v2 GCACGCGCGCGCGCGCATTACGGGGGGAATTTGTATTTTATAGATGACCTGGGCTGCGAC TCTTGATTATGGGCGCAAGACAAAGAACGAGGACATACGGCCAGGGCCACTGCGTCCAGC AAATATCATAAGGAATAAATTTCCTACCTACAAGAATGGTTCGAATGGCATAGTGATCAA GCTGGCAGATGGCCCAGAAGTGCCGCCTCTCAAGGAGGTTGTTGCTAAGGAGACCGAGGA ACTGCTTGATCGCCGTCAGCGCTTCTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGG ACTCAACACTGCCACTCTGTTGTCTAAAGAGGTTAAATGGAGACAAGTGGCTTTGTTGGA GCGAGACATTCTCCTGAAAAATCTAAAGAGTGTACTGGAATCACTGAGAGGTCAAGTCAC TGGCAAAACTAAGGACGAAATTGAGGAGTCTATTTCTATGGTGGAAATTCTTGCAGTTCA GCTCTCCAAAAGAGAAGCTGAGTTGATTCAACAAAAAACGGAGGTCACAGAATTAGCGAA ATCATTAAAGCTGGCTTCTGAAGATGCCAAGAGAATTGTTGAAGAAGAAAGAGTTAATGC CAATACGGAGGTAGAGAGTGCTAGGTCTGCAGTGCAAAGA
Homology of Contig U35_24691 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g24940.2 | 504 | 2e-102 | protein|proline-rich family protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g61680.1 | 495 | 2e-117 | |
| Arabidopsis v10 | AT2G26770.1 | 496 | 8e-54 | plectin-related | chr2:11404257-11407743 REVERSE LENGTH=496 |