barSeed - Barley Seed Development Database

Probe CUST_19420_PI390587928

Source Contig U35_24693

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19420_PI390587928	Hv_44K_v2	TACCTTTGTTTTTCATCATGCATCTCACCCATGGAGCAAAAGTAAAATACTTCTCTGGAT	795	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11560.1	2046	2e-24	790 - 849	100	60 / 60	plus	ABC15379
MLOC	MLOC_11560.6	1238	2e-24	80 - 139	100	60 / 60	minus	None
MLOC	MLOC_11560.9	1074	2e-24	68 - 127	100	60 / 60	minus	None
MLOC	MLOC_11560.7	1230	2e-24	79 - 138	100	60 / 60	minus	None
MLOC	MLOC_11560.8	1120	2e-24	72 - 131	100	60 / 60	minus	None
JLOC1	JLOC1_7664.2	2390	8e-25	976 - 1035	100	60 / 60	plus
JLOC1	JLOC1_7664.1	2373	8e-25	959 - 1018	100	60 / 60	plus
Harvest21	ABC18761	858	3e-25	796 - 855	100	60 / 60	plus
Harvest35	U35_24693	858	3e-25	796 - 855	100	60 / 60	plus

Contig Sequence (858 bp)

>U35_24693 858 Hv_44K_v2
CATTTCCAGATTCTGTGTTCGGCCCTTCACGTGCTGCTTCCTCCGATCCGGCGCCGACCG
CGCCCACCTCCTCCTCCCTCGATCCGCATTAACTACTCCCTCTTCCGGTGCCGCCGCCTC
CTCCTTGTCAATGCGGTGGAGGCGTCGGAGCTAGCTGCACATCGCGGCAGGCGTGAAGAA
GGAAGAGCGGTGGAGGCGGATGGAGGAGGAGGGGAGGTCGCTGGCGGAGACGCCGACGTG
GTCGGTGGCCACGGTCACCACGCTCATGGTGGCCACATGCTTCCTCATCGAGCGCTCTCT
CTCACGCCTCGCCAAGTGGCTGCGGAAGACGAAGCGGAAGGCCATGCTCGCCGCACTCGA
GAAGATCCGCGAAGAACTGATGCTGCTCGGTGTGATATCACTGCTGCTGAGCCAGACAGC
CAGGTGGATATCGGAGATCTGCGTGCCATCGACGCTCTTCACCAGCAAATTTTATATGTG
CACAGAGAAGGATTTCGACGATCTGGATCAACATGGAGAGCACACCGCTAACAACACCCA
CATTGCTAGAATCCTAGTTGGTGGCCAGTCGATGCATGTTTGTGATGAGGGTCATGAACC
TTTTGTTTCATATGAGGGTCTTGAGCAGCTGCATCGCTTTCTGTTTATTCTTGGTTTTAC
TCATGTGCTTTACAGTTTTGTGACAGTGGTTCTCTCAATGATTAAGATATATAGCTGGAG
GAAGTGGGAAACTCAAGCATGTACACTCTCAAGGGAGCAGTTGCAACCTAGGAGAAAGGT
TATGCGAAGGCAATCTACCTTTGTTTTTCATCATGCATCTCACCCATGGAGCAAAAGTAA
AATACTTCTCTGGATGCT

Homology of Contig U35_24693 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g07912.1	516	1e-104	protein\|MLO domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g23887.1	514	7e-119
Arabidopsis v10	AT1G11000.1	573	2e-73	\| Symbols: MLO4, ATMLO4 \| Seven transmembrane MLO family protein \| chr1:3671935-3675909 REVERSE LENGTH=573