barSeed - Barley Seed Development Database

Probe CUST_19403_PI390587928

Source Contig U35_48653

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19403_PI390587928	Hv_44K_v2	CTTCCAGAATCCAGAGTACCATTCAGTAATGTTTCAAGTATGTGCCTTTTTCATTTGCTT	36	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.901	2.713	2.310	1.416	0.525	0.519
Raw	96.450	457.308	319.163	311.710	39.259	43.499

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69561.2	3455	2e-24	3156 - 3215	100	60 / 60	plus	ABC12925
MLOC	MLOC_69561.1	3197	2e-24	3100 - 3159	100	60 / 60	plus	ABC12925
JLOC1	JLOC1_46097.1	3102	8e-25	2851 - 2910	100	60 / 60	plus
Harvest21	ABC12926	641	3e-25	30 - 89	100	60 / 60	minus
Harvest35	U35_48653	648	3e-25	37 - 96	100	60 / 60	minus

Contig Sequence (648 bp)

>U35_48653 648 Hv_44K_v2
TGGAATTAAGACANCATGTATTTACAATTCTTAATTAAGCAAATGAAAAAGGCACATACT
TGAAACATTACTGAATGGTACTCTGGATTCTGGAAGGAAGAATATAATACAAGACTGACC
ATGCAAGAAGCACCTATATCTAACATAACTAAGCCTGCTCCACCAAAAATGCACTAACTG
TTCCTGTGAAAACTAACCGTGTATGGGCACATACAACGGGCAGGTGCTACAGAAGAGTAA
TCAGGTTCATCATCTACTAACGGGTTGTTGGCCAGGAACAATCAGCTCTAGAGTCCAAAA
ATATGAACAGGTCACCATTTACAGAAGCTAGGAAGATTGGGGATTCGCCTTCCATGTTGA
GAGGGCATACAGGATACGCCCCTTCCATCCTTGTAGTAACCACTTGTTGTCCTCGTCGAT
GATGAAATTCTTGTGGTAGCACTTCACCTTCTCCCGCGCACGCTTCATGATCTCCTGGTC
CAGCGGGAGCTGCTTGAACCCAGCTCTCTGATTCCGCACCTGCCACTGCTTGTAGGTCTC
TGGCCTCTCCATCCTCTCCATTCCCTCACAAGATATCACATTAATCGCCTCCCGGCTAAA
CAGAGCCGACTCAATGAGCAGCCTCTCCTCGTTATCCCTGGGAATGTT

Homology of Contig U35_48653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62460.3	706	3e-58	protein\|ZOS1-16 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi2g54670.2	806	1e-60
Arabidopsis v10	None