barSeed - Barley Seed Development Database

Probe CUST_19402_PI390587928

Source Contig U35_48654

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19402_PI390587928	Hv_44K_v2	ATACACACAAAGTGCACAGTTTTCTCTACCAGTGAGATGTGCAGGGAAAGAAAGGAAACA	-1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365733	4220	3e-22	1480 - 1538	98	59 / 60	minus	ABC07620 ABC12169 ABC14799 ABC15296
MLOC	MLOC_67216.3	1524	3e-22	1450 - 1508	98	59 / 60	plus	ABC12169 ABC15296
MLOC	MLOC_67216.2	1647	3e-22	1573 - 1631	98	59 / 60	plus	ABC15296
JLOC1	JLOC1_44351.1	1911	1e-22	1450 - 1508	98	59 / 60	plus
Harvest21	ABC50625	470	1e-23	4 - 64	98	60 / 61	minus
Harvest35	U35_48654	470	1e-23	4 - 64	98	60 / 61	minus

Contig Sequence (470 bp)

>U35_48654 470 Hv_44K_v2
GGTTGTTTCCTTTNCTTTCCCTGCACATCTCACTGGTAGAGAAAACTGTGCACTTTGTGT
GTATCATCATGTCGCTAAGTCTAGGGGTAGGGGAGTAATGGAAACCCTTTCCCTGGCCTT
GAAAGCTTCTTTGTCCCAGTTGGTGCGCAGAGTAATGGACATGAACAACACCGTCTGAAC
GACAAGCGCGCAGGTTATTCCCATCCATAGCCCCACTCCACCAAGATGGTACACAAATGC
AAAACATAGAGCCGCCGGGATGCCGACGAGGTAGTACGCACTAAGATTGACATAGGAGCC
AATCTTTTGAAAGCCGCAGCCCCTAACAATACCTGAAAGAACACACTGCATGTCATCAAA
CAAGAATGCCACGCCAATAATTGGCATAATTCTTGAAATGTACTCCACCACTTCCTTGTC
GTTGCTGTATGCATACCCNCATAGATTGCGCACCAAAACGATAGCAAGAG

Homology of Contig U35_48654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g30490.1	484	8e-62	protein\|MATE efflux family protein, putative, expressed
Brachypodium v1_2	Bradi5g07160.1	482	6e-63
Arabidopsis v10	None