- Probe CUST_19393_PI390587928
- Source Contig U35_36687
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19393_PI390587928 | Hv_44K_v2 | TGGGGACGAGCCACGTGCAGGAGGAGGAAGGGCGGGACAGGACGAGCCTCCTGCTCCCCG | 148 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 11.523 | 4.322 | 1.722 | 0.475 | 0.114 | 0.171 |
| Raw | 1093.884 | 594.789 | 219.157 | 92.781 | 7.087 | 13.585 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_47456.1 | 2569 | 2e-24 | 1497 - 1556 | 100 | 60 / 60 | plus | ABC05703 ABC13674 |
| JLOC1 | JLOC1_30598.1 | 2395 | 8e-25 | 1323 - 1382 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31912 | 209 | 3e-25 | 149 - 208 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36687 | 209 | 3e-25 | 149 - 208 | 100 | 60 / 60 | plus |
Contig Sequence (209 bp)
>U35_36687 209 Hv_44K_v2 GGCGAGACCATCACGCCGCTCCAGGGGCTCAATGGGTACGTGAAGGACGTGAGGTTCGAG CCCGGGTGCAGCGACACGGCGTGCTGGTCCGTCGCGACGGGCAAGGCGGTGGCGGTGGCG AGGTCGTCAGACCACGTGATCCTGTTCATGGGGACGAGCCACGTGCAGGAGGAGGAAGGG CGGGACAGGACGAGCCTCCTGCTCCCCGG
Homology of Contig U35_36687 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |