barSeed - Barley Seed Development Database

Probe CUST_19390_PI390587928

Source Contig U35_48663

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19390_PI390587928	Hv_44K_v2	AACCTAAAGAAGCGAGAATCATGATGCATGAGCCGTGGCTTGCGGCTTTAAAAAGTGACA	550	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5355.2	4323	2e-24	997 - 1056	100	60 / 60	plus	ABC04370
Harvest21	ABC50635	641	3e-25	551 - 610	100	60 / 60	plus
Harvest35	U35_48663	641	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_48663 641 Hv_44K_v2
GATCCGCTCCCCGCGAGCGATGGTGGGCGACCTGTCCCTCCTCGCCTCCGCCACCGCCTC
CCCCGTCCTCCTAGCGCCATCCAAGGAGCTCCATGGCGTCCTGCCGTTCCAGGGGAAGAG
GTCCCAGCAGCAGCAGCAGGACGCTGGGAGGAGCGCCGCCGTGCAGCTCTCCCCGCAGCA
GCACCTCCTCGAGGGCGCCTACCAGGCGCAGCAGCCCCTGCAGATGATGGTCCCCGGGAT
CGGCCAGGCCGCCGCTGCCGCCTACCAGGCCTTCGACAGCGCCGCGCTCATCGACGCGCA
AGGTGATAAACCCGTTCTAGCCGTGCCGGCGCGCGCTGACTCCTCAATATGATGCTGAAT
GTTGCCATATACGCATGCCTCGTTTGATCATCGGATGCTGCAGAGGTCAGCTTGACCGAG
AGCCCATCTGCTCATGAGCTTAACGCTTTTGCCTCGTCGAAGGTTACAACCAGCGTCAAA
TCCTGACCCAGCGTGAAAGCAAGTATTCTGATTTACTGAACGCAACGATATTTAAAGGTT
GCTGATTGTTAACCTAAAGAAGCGAGAATCATGATGCATGAGCCGTGGCTTGCGGCTTTA
AAAAGTGACANAAAAAACCTCTACATGTCGACTGCTTTGTT

Homology of Contig U35_48663 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None