barSeed - Barley Seed Development Database

Probe CUST_19384_PI390587928

Source Contig U35_36691

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19384_PI390587928	Hv_44K_v2	AACAAGAATGCAAGGCACTTTATAGGGTGTGCGAGCATTTCTCAAGGAAGCTTTGAAGTG	331	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.873	1.315	1.124	1.064	0.942	0.839
Raw	4.839	14.059	11.451	15.674	3.294	2.766

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59543.1	1499	2e-24	1056 - 1115	100	60 / 60	minus	ABC49967
MLOC	MLOC_59543.3	1062	2e-24	664 - 723	100	60 / 60	minus	ABC49967
JLOC1	JLOC1_38756.4	1603	8e-25	384 - 443	100	60 / 60	plus
Harvest21	ABC31917	595	3e-25	332 - 391	100	60 / 60	plus
Harvest35	U35_36691	595	3e-25	332 - 391	100	60 / 60	plus

Contig Sequence (595 bp)

>U35_36691 595 Hv_44K_v2
TTGGGAGTCGGCACGAGGGACCCCCGGGGCGCGTGGCCGTCGGCGCCCGCGCCGCTCAGG
GTCTACGTGTACGAGATGCCGCGCAAGTTCACCTACGATCTGCTCAGGCTCTTCAGGGAC
TCGTACCGCGACACCACCAACCTCACCTCCAACGGGAGCCCCGTGCACAGGCTCATCGAG
CAGCATTCTATTGACTTTTTTCTGGGGGCTGATCTAATTGCTCCTGAATCACAAAGGCTG
CGGAAGAATGTTATCAGGGTTGAGCGGCAAGAAGAAGCAGACATTNTCTACGTTCCATTT
TTCACAACAATCAGTTACTTCTTGCTGGAGAAACAAGAATGCAAGGCACTTTATAGGGTG
TGCGAGCATTTCTCAAGGAAGCTTTGAAGTGGGTGACTGATCAACCTGCTTGGCAACGTT
CAGAAGGCAGAGATCATGTTATTCCTGTTCATCACCCATGGTCTTTTAAGTCAGTCCGAA
GATTTGTTAAGAAAGCAATATGGCTTCTACCTGATATGGATTCTACTGGGAACTGGTATA
AACCTGGGCAAGTTTATCTTGAAAAGGATGTTATCCTTCCATATGTCCCAAATGT

Homology of Contig U35_36691 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59630.1	500	1e-95	protein\|exostosin family domain containing protein, expressed
Brachypodium v1_2	Bradi2g53000.1	496	5e-97
Arabidopsis v10	AT5G16890.1	511	7e-80	Exostosin family protein \| chr5:5551664-5554741 FORWARD LENGTH=511