barSeed - Barley Seed Development Database

Probe CUST_19375_PI390587928

Source Contig U35_48682

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19375_PI390587928	Hv_44K_v2	ATCACTTGGTTTGGTGTGTAATTAGTGTTGTGTAGTATGTCAGCTTTGCAATAGAATATG	23	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38731.1	1469	2e-23	1062 - 1119	100	58 / 58	plus	ABC18140
MLOC	AK249843.1	2557	9e-22	2483 - 2540	98	57 / 58	plus	ABC18140
JLOC1	JLOC1_25205.1	1438	1e-23	1024 - 1081	100	58 / 58	plus
Harvest21	ABC50667	630	3e-25	24 - 83	100	60 / 60	minus
Harvest35	U35_48682	630	3e-25	24 - 83	100	60 / 60	minus

Contig Sequence (630 bp)

>U35_48682 630 Hv_44K_v2
CTTGGGAAAATTGAAAATTGATACATATTCTATTGCAAAGCTGACATACTACACAACACT
AATTACACACCAAACCAAGTGATGTGCCTTAGACACGCTAACAGCTCATATCATCACCTA
CCTGCCTGTTGCTAGCAAGGGCTCTTGTAGCTCTCACCGCTCGAACTGGATAGGAAATGC
CCCGTGAACATCAACTGCTTCAGCAATAATTCCATGTTGTTGGCATCCTTGTGGATAAAA
TAGGAGGCGCATTCCGCACGTTCACATCAAGTGGTAGCATCCGATACTCAATGTCGAGGT
CCTTGAGGACTTTGATCATCTCCTTGAGCACCAGCTCCCTCCTCACATACCTCATCCCCA
TGTCCTGGAAGTTGAGCGTGTGACAGAGCCATATGGATATTTTTAGCTTGTTCGTCTCAT
CTACATCTCGGAGGATGACCATCGCCCCCGGGTACCAATGCTCTTTCTTGTTGTTGATGT
AACGTAGTATTCTTTCCTTCATTAGTGCTAGTTTCGCTACCGGTGTGGCAACGTGAATAT
AGAAATCAATTCCATCTCCCATATCAGGACTCCTGTAAAAATTCTTAATCGGTATGGAGG
CCAGTACATTGTTTGGATAATATATCTTCA

Homology of Contig U35_48682 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44770.1	975	2e-79	protein\|uncharacterized mscS family protein, putative, expressed
Brachypodium v1_2	Bradi3g51250.1	960	1e-81
Arabidopsis v10	None