- Probe CUST_19373_PI390587928
- Source Contig U35_48685
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19373_PI390587928 | Hv_44K_v2 | TTTTCTGCTCACATTTTCTCGCTTTTTCACGTGCTCTGGTCGATTTTGAGACGCCGAATG | 79 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.808 | 2.565 | 1.201 | 0.780 | 0.330 | 0.455 |
| Raw | 663.894 | 944.000 | 392.799 | 408.610 | 61.260 | 89.398 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56126.6 | 1309 | 2e-24 | 1214 - 1273 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_56126.5 | 1825 | 2e-24 | 1726 - 1785 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_56126.4 | 1719 | 2e-24 | 1624 - 1683 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_56126.1 | 1907 | 2e-24 | 1808 - 1867 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_36282.6 | 1365 | 8e-25 | 1200 - 1259 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36282.5 | 794 | 8e-25 | 629 - 688 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36282.4 | 1942 | 8e-25 | 1777 - 1836 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36282.2 | 1780 | 8e-25 | 1615 - 1674 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36282.1 | 1790 | 8e-25 | 1625 - 1684 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC50671 | 583 | 3e-25 | 80 - 139 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_48685 | 583 | 3e-25 | 80 - 139 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_24510 | 826 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus |
Contig Sequence (583 bp)
>U35_48685 583 Hv_44K_v2 CTACTTCTATGTAGNTATGGAAATATCGCCTGCAAGCACGCGGGGTTCACAAGGTTTTGC ACAGAACTGGACGGCCGAGCATTCGGCGTCTCAAAATCGACCAGAGCACGTGAAAAAGCG AGAAAATGTGAGCAGAAAAGTGTGTTAATCTACTGCTGGCCTGCTCCTCCTCTTTCTCCG GGAGCGAGTGAATGGATCCACCCAAGTTCTATCTTCCCTCGCAGCGCGCTCCCAGCGCTT CTGGAAATCACGAAGCTCCACCCGCGATTTTCTCCTGACCTTTGTCCTCATGTCAAGGCC TGCTGCCCTCCCTCTCGTTTGTTGCTGCACTTGAGCAGTTTTCTGACGGAGTGCATGTGA GCCCTTGCCACGGGTACGCTTTGTCACTGCAGAACCTCCTAATGTCTGTACTCCTCGATG GACTACAAATTCGCTATCAACAACTCCAATGTTCTTTGTCCTGTCGCCCTGGGCGCAATA TCCAAACTTGTAATCAATACCCCATCCATGGACAAGATCATTCTGGATGAGATGCCAAGC ACATTGCCAAGCAGATTTCGAAAAAACCGGTGCCATGCCCTCG
Homology of Contig U35_48685 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g37760.2 | 391 | 4e-70 | protein|lysine ketoglutarate reductase trans-splicing related 1, putative, expressed |
| Brachypodium v1_2 | Bradi1g24590.3 | 369 | 4e-83 | |
| Arabidopsis v10 | None |