barSeed - Barley Seed Development Database

Probe CUST_19363_PI390587928

Source Contig U35_48699

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19363_PI390587928	Hv_44K_v2	GTAATGTTGGCCTTGTACATAGCAACCAAGATATTGCCATCAATTGTACAATAAGCATTA	0	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.979	2.580	2.787	1.683	0.686	0.725
Raw	320.983	1366.528	1249.503	1235.845	168.224	193.637

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36713.1	1985	2e-24	1779 - 1838	100	60 / 60	plus	None
MLOC	MLOC_36713.2	1616	2e-24	9 - 68	100	60 / 60	minus	None
JLOC1	JLOC1_23683.2	2013	8e-25	1862 - 1921	100	60 / 60	plus
JLOC1	JLOC1_23683.1	2801	8e-25	2650 - 2709	100	60 / 60	plus
Harvest21	ABC50698	651	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_48699	651	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (651 bp)

>U35_48699 651 Hv_44K_v2
TAATGCTTATTGTACAATTGATGGCAATATCTTGGTTGCTATGTACAAGGCCAACATTAC
ACTTGCGCACTAGTCAAGCCTTTTTTTCTTTCTCCTCTCCTTTTTGTGGATTTCTACTAA
GTAGATCAATAACTGTATAAATGGTGGCTTGATGGGGTAGGTTATATATACACTATCAAT
GTGATTTCTTGGAGAAGATGCCAGCTATCCGGTAAATGATCAGATTTCGAACTCCCAAAT
CAGTCTCATGCAGGAAGTGATGGCATGAATATAAATTGAATGTGTTCCTCTACGATCTGG
CTGGATGAAATGCCCTGGCTCGATTAATTTGATATTCTGGCAGCAGGTTCAGATGCGGAA
CTTATTGTAGCCGATGACTTCATGCTGATCTCAAGCTCTTGTTGTTTCTTGAGATAATTC
TGTGCTGTGGAAGTGATTATCTGAACGAGGAAATTCACGATCATGAGCCACACCACCGTA
TTCCAGATCAAAGAGAACGACAGATTCCACTTATTCCCCTTCGCAGCACTAGAAGCTGAT
GCAGCAACACTGGCCATTAAAAACTTATCCTTGGCTGTCTTCAACTTGGTGACTAAAGAG
GGAAGCATAGATGATACTCCAGGAAAATTGCTAAGCACCCATACAAGCCTT

Homology of Contig U35_48699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None