barSeed - Barley Seed Development Database

Probe CUST_19362_PI390587928

Source Contig U35_7600

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19362_PI390587928	Hv_44K_v2	CGGAAGAAAAGCAGGCACCATAATGCCAGCATGCTGTAACAAACAAACTTCTTTTTAGAT	628	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57231.2	2239	2e-24	308 - 367	100	60 / 60	plus	ABC11515 ABC16379
MLOC	MLOC_57231.1	1943	2e-24	445 - 504	100	60 / 60	plus	ABC11515 ABC16379
JLOC1	JLOC1_37053.1	687	8e-25	589 - 648	100	60 / 60	plus
JLOC1	JLOC1_37054.2	2532	8e-25	1751 - 1810	100	60 / 60	minus
Harvest21	ABC16378	690	3e-25	629 - 688	100	60 / 60	plus
Harvest21	ABC16379	692	1e-23	4 - 63	98	59 / 60	minus	ABC16379
Harvest35	U35_7600	691	3e-25	629 - 688	100	60 / 60	plus

Contig Sequence (691 bp)

>U35_7600 691 Hv_44K_v2
AGGAGATTGCTAAGGGACTAGATGCACTTGGAGTGGCCACATTAAGTTCTGTAACGTCTG
CTGCAGCCTCAAGATTGCCATTTGCACCATCCTCATCACCCTCACTGAACAACGAGGAGG
CCACTAACTTGAGAAACCTCTACCGCCTTCTCCAACTTGTATCTAAGACTCCTCAGAAGG
AAAACACATCTTGGGCTCCTGGATATGAAAGCACTGGGGAGAAAGGAGATGATGGCACAA
ATGATATTTCTCTTGTGTTAAATGAAATGAGGTCTTTTCCAGAGTTTTTGCCAGTTCTTT
CTATCATTCCTGAGCTTTCACCAGAGTCCCAACAGCAGTTTCTACTCCTGCCTGCGGATT
TAACAAATCTCGTTTTATCTCGGGCTGTTGCAAGAACCATCAGAAGAATGTTCATATGAA
CTTAAAGCCTACATGTACAGGTTTTCAATCTCAGGTTCCTGCAGTGTTTTTGTTTAGCTG
TTTAGCTGTCCGCTAGATGTATAAAGAGATTTGTTTCCCATACAGTAGCATTATCAAATA
GGCACATCTAATTATTGGCTTAGCTGTGATTATTTTGGAGATATTACTTTTCCCTGTACA
TCTTTGTTGAGAGAATATGTACATATCTCGGAAGAAAAGCAGGCACCATAATGCCAGCAT
GCTGTAACAAACAAACTTCTTTTTAGATCTA

Homology of Contig U35_7600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g54790.1	721	3e-51	protein\| ELMO/CED-12 family protein, putative, expressed
Brachypodium v1_2	Bradi5g23450.1	705	6e-59
Arabidopsis v10	None