barSeed - Barley Seed Development Database

Probe CUST_19358_PI390587928

Source Contig U35_7604

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19358_PI390587928	Hv_44K_v2	CAAAATGGCTTGCTTTGTTGACAATGGAAAAGGCATGCTTGTCAACTGTCGCATTAGAGG	1144	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363338	3187	2e-24	984 - 1043	100	60 / 60	plus	ABC09748
MLOC	MLOC_73738.3	2871	2e-24	563 - 622	100	60 / 60	plus	ABC09748
MLOC	MLOC_73738.4	2850	2e-24	563 - 622	100	60 / 60	plus	ABC09748
MLOC	MLOC_73738.5	2853	2e-24	563 - 622	100	60 / 60	plus	ABC09748
MLOC	MLOC_73738.6	2874	2e-24	563 - 622	100	60 / 60	plus	ABC09748
MLOC	MLOC_73738.1	3765	2e-24	1711 - 1770	100	60 / 60	plus	ABC09748
MLOC	MLOC_73738.2	3789	2e-24	1711 - 1770	100	60 / 60	plus	ABC09748
JLOC1	JLOC1_49102.4	2892	8e-25	561 - 620	100	60 / 60	plus
JLOC1	JLOC1_49102.3	2889	8e-25	561 - 620	100	60 / 60	plus
JLOC1	JLOC1_49102.2	2876	8e-25	566 - 625	100	60 / 60	plus
JLOC1	JLOC1_49102.1	2873	8e-25	566 - 625	100	60 / 60	plus
Harvest21	ABC18614	841	3e-25	778 - 837	100	60 / 60	plus
Harvest35	U35_7604	1208	3e-25	1145 - 1204	100	60 / 60	plus

Contig Sequence (1208 bp)

>U35_7604 1208 Hv_44K_v2
AAAAAAAGGAAAAGTATCATCAAAACCACGACAGATGAACAACAATCTGACGGTCGAGAA
GCGCGTCGAGACTAACAAACCTGGCCAGCAGTAGTCAGGCAGTAACCAGCTCCCCGTCCC
CGAATTCCTCCCCTCCGGCTCCGAGGCCGGAATCCCCAAATCCGGATCAGCCGCAAAGCA
AAACGTTCGAAACCCAGACAGAGACGCCCACGCCCAAATCTCTCTCTCTCTCTCTCTCCC
CCCTCGCATGCGCGCAGGCGCAGCTACCCGCAGCAGCAGCGAGTCGCCATGATCGTGCGC
ACCTACGGCCGCAGATCCCGCACCTGCGGCGCCGGCGCCGGCGGAGGCGGAGGCGGAGGC
GGAGGGGAGCGCGGCCTCTCGTCCTCGCAGGACGCGTTCGACTTCGACGGCGGGGACGGG
GACGACGAGCTGTCGGCGCCGGGGTCGCAGCCCCAGCTTTTCCCGCCGTCGCAGGAGTCC
TCCTCGATGTGGGACTTCGACGAGGACCCGCCCACGCAGCCGCCGCCGCCGCCGCCGCGC
CGGAAGGGGTGGCGCCGCGGGAGGCACGCCGACCCCGAGCCCGAGCCGGCCACCGCCACG
CTCATGGAGGCCGAGGAGTACGGGGAGATGATGGAGAGCGTCGACGAGGTCAATTTCGCG
CTCGACGGGCTGCGGCCCACCGCGCCCAGGCGGGTGCGCCGGGCCAGCCTGCTCGCGCTG
CTCGGGATCTGCACCTCCGCCGCGCGCCGCCGCGTCCTCCGGGCTCAGGGATTGGTAAAG
CAAATTATAGATAATGTTTTGGCCCTGAACATTGATGATCCTTCCTGTGGTGTTGCCGCA
GCAGCTCTTTTATTTGTTTTGGCAAGTGATGTACAAGAGAATCATGTGCTAAATTCAGAA
TCGTGTATTCGGTTTCTTCTGAAATTATTAAATCCTCCAATGGATGCAAATGATGTCAAA
GCACCATCTATAGGTTCCAAACTCCTTGGAATCAGTAAAGTTCAAATGTTTAATGGCTCA
AATAAGGATTCCGATTCCAGTTCAGAGGATATCACATCAAAAGTTGAAGAAATCCTCTTA
AGCTGTAAAGAAATCAAGCCACTTGACAGGGATGGCAAGAGAACATCAAGGCCAGAATTA
TGTCCAAAATGGCTTGCTTTGTTGACAATGGAAAAGGCATGCTTGTCAACTGTCGCATTA
GAGGAGAC

Homology of Contig U35_7604 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35380.1	888	9e-98	protein\|expressed protein
Brachypodium v1_2	Bradi3g29910.1	895	5e-110
Arabidopsis v10	None