- Probe CUST_19352_PI390587928
- Source Contig U35_7610
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19352_PI390587928 | Hv_44K_v2 | TAACGAACGCCGGTCTTGTTTGGGAGGGGCCTCGTTCCTAGTCTATCTCGTCTCGTCTGA | 51 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.161 | 0.175 | 1.196 | 1.720 | 1.105 | 1.307 |
| Raw | 14.898 | 21.484 | 147.702 | 323.661 | 78.020 | 98.629 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373250 | 1601 | 2e-24 | 65 - 124 | 100 | 60 / 60 | plus | ABC11375 ABC11376 |
| MLOC | MLOC_52475.1 | 479 | 2e-24 | 251 - 310 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_33630.1 | 400 | 8e-25 | 227 - 286 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC15486 | 340 | 3e-25 | 52 - 111 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7610 | 341 | 3e-25 | 52 - 111 | 100 | 60 / 60 | plus |
Contig Sequence (341 bp)
>U35_7610 341 Hv_44K_v2 GATCGACCTCCATTCCGCACCGCCTTTGGTGGGAGGTTCTTGGATCCGGACTAACGAACG CCGGTCTTGTTTGGGAGGGGCCTCGTTCCTAGTCTATCTCGTCTCGTCTGAGAGGATGGC GGCGGCGACCATGGTTGGCATGCCCAAGAGCCCCCGGTCGGTGGCCTTCGCGACGGCCGC CTCGCCCTTCGGGGACAGGAGAAAGGCCCGGTTCTGCGTCGCCGCGTGCGGCAGGGACGA CCAGCAGCCGCCCCCGTCGATGGCCGCGATGCCGGCGTCGCTGCGGGCGATCCAGGCCAA GAGGAAGATGGCGGCGCAGGCGCGCGGGGTGCCGCGGGCGA
Homology of Contig U35_7610 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |