barSeed - Barley Seed Development Database

Probe CUST_19351_PI390587928

Source Contig U35_7611

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19351_PI390587928	Hv_44K_v2	GTGTTGATTGTGGTTTAATTTTGGGAATGGTAATAATGAAACAGCATATGGCCTCATCAT	429	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.711	5.122	1.155	0.917	0.537	0.525
Raw	60.918	107.808	20.844	21.710	3.638	4.474

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_7611	523	3e-25	430 - 489	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_7611 523 Hv_44K_v2
GGCCCCTTCTGGGACCACTGCCTGGAGTACTGGGAGGAGAGCGTGGCGAGGCCGGACGCC
GTCCTCTTCCTCAGGTACGAGGAGATCAAGTCGGACCCGGCGCGGGTGGTGAGGAGGCTC
GCGGGGTTCCTCGGCGTGCCGCTGAGCGAGGAGGAGGAGCGCTCCGGCGTGGCCGAGGAG
GTGGCGAGGATGTGCAGCTTCGAGACGCTCACCGGGCTGGAGGTGAACCAGGTCGGCGGC
GTCAGCCACGGGAGTAGAGTTCACGTTGAGAACTCGGTGTTCTACAGGAAAGGCGAGGTC
GGGGACTGGGCCAACCACATGAGCCGCGAGATGGCGGACAAGCTCGACCGCATCGTCCAG
GACAAGCTGCAGGGGTCAGGCCTGCTGTTCTGAGTCATCTGTTATCTGTGGTCTTTTCCA
CTCTGCTCTGTGTTGATTGTGGTTTAATTTTGGGAATGGTAATAATGAAACAGCATATGG
CCTCATCATAAAAAAAAAAAAAACCCCAAAAAAAAAAAAAAAA

Homology of Contig U35_7611 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None