barSeed - Barley Seed Development Database

Probe CUST_19348_PI390587928

Source Contig U35_7614

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19348_PI390587928	Hv_44K_v2	CGTCGCACTATGTATTACTACTAGCGTCCGAAGAGATTTTTGTGTGATTATTAATTAAGA	406	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.092	5.354	1.309	0.565	0.238	0.200
Raw	278.127	311.082	62.276	47.419	5.156	4.736

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363670	1688	2e-24	13 - 72	100	60 / 60	minus	ABC18984 ABC41722
MLOC	MLOC_43243.1	650	7e-23	492 - 551	98	59 / 60	plus	ABC18984 ABC41722
JLOC1	JLOC1_27949.1	722	4e-23	484 - 543	98	59 / 60	plus
Harvest21	ABC18984	516	3e-25	407 - 466	100	60 / 60	plus	ABC18984
Harvest21	ABC41722	407	1e-23	30 - 89	98	59 / 60	minus	ABC41722
Harvest35	U35_7614	516	3e-25	407 - 466	100	60 / 60	plus

Contig Sequence (516 bp)

>U35_7614 516 Hv_44K_v2
GCACGAGGAGGTGGTGGACGGGCGCGGCGAGGGCAAGTGGCGGGAGTACCTGGTGGAGTG
GCGCGACGGCGGCGACCGGGAGTGGGTGAAGGCGCCGTGGGTGGCGGAGGACCTGGTGAA
GGACTTCGAGGCCGGGCTGGAGTACGGCGTCGCGGAGGCCGTCGTGGACAGGAGGCAGGC
GGCGGACGGCGACGGGGATGGCAAGTGGGAGTACCTCGTCAAGTGGGTGGACATCGAGGA
GGCGACGTGGGAGCCCGCGGAGAACGTGGACGCCGAGCTCGTGCAGGAGTTCGAGCGGCA
GCAGCTCGGGAACGGTGGCGACGCACCGCCGGCGGAGACATTTGCAGTTTGACGGCGGCC
GTCGATCGTGCTCGGTTCGCTCTCCGGTTTTGTCGTGTCGGTGGAACGTCGCACTATGTA
TTACTACTAGCGTCCGAAGAGATTTTTGTGTGATTATTAATTAAGAAACGTTCCCATGAA
AAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAA

Homology of Contig U35_7614 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g03990.1	389	1e-56	protein\|signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g76290.1	400	3e-59
Arabidopsis v10	None