barSeed - Barley Seed Development Database

Probe CUST_19346_PI390587928

Source Contig U35_7616

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19346_PI390587928	Hv_44K_v2	CTATAGCTTTTGTATCCGAAAATGTGTCTCCCCTTGGCATGAATGGTTAATACTCGGTGG	533	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.539	1.448	1.221	0.987	0.430	0.447
Raw	1171.775	1703.568	1248.457	1555.975	245.919	276.776

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367148	3542	2e-24	3272 - 3331	100	60 / 60	plus	ABC20954
MLOC	MLOC_79089.1	2703	2e-24	2356 - 2415	100	60 / 60	plus	ABC20954
JLOC1	JLOC1_52704.1	3040	8e-25	2673 - 2732	100	60 / 60	plus
Harvest21	ABC20954	630	3e-25	38 - 97	100	60 / 60	minus	ABC20954
Harvest35	U35_7616	630	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_7616 630 Hv_44K_v2
AGCAGTTGCATTCAATATAAAGGACTGCAACACCGGAACTTCGCTGATCAATCCTGAAAC
TGTACAGAAGATGGCAGAGAAAGAAGGCCTCAATGTTGGCGTCAGTTTTCTGAGTCATAT
ACGCATCATGGACATCCAGAAACATGGGGTGGCTGATGTGGGCCTCAGCTCTTCCCTGTG
TAGGCCTACATCAAACAGCCGGCACGAGAAGAAAAATAACAAAAATTCCATTGCTAGGAT
TGAAGTGGTCACTGCTTCTCTTGGCTTCCTTACAAACTTTGACGACGTCTACAGGTTATG
GGCATTTGTTGCAAAATTTCTGGACTCATCATTCCTTGAACAGGAGAGGCTATCATCGAT
CCCCGAGGATCCAGAACAATAGTGTTTAGAGGATTTCGGTTGTGGCTTTTTGCAGCATTT
AGAGAATTCAGTTGTGGCTATTGCAGCTACTTTGTTATAAATACAGAAGGAAGGTGGTGG
CGACAGTGTAATTGTGATGAGGGGTGGAAGAAGAGATGTCAGGGCGCTTTTGCCTATAGC
TTTTGTATCCGAAAATGTGTCTCCCCTTGGCATGAATGGTTAATACTCGGTGGCGCGGCT
GGTATATTTCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55704.1	1060	3e-63	protein\|expressed protein
Brachypodium v1_2	Bradi1g07540.1	931	3e-68
Arabidopsis v10	None