- Probe CUST_19344_PI390587928
- Source Contig U35_7618
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19344_PI390587928 | Hv_44K_v2 | AATGTATGAGCTGCCAAGCTGTTGCTGTGCATGTCCCATACTGAAATCTAAACGAGGCTT | 399 | GeneList: greenyellow MasterList: Reassembly_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 7.755 | 3.656 | 1.080 | 0.411 | 0.942 | 0.839 |
| Raw | 58.022 | 40.953 | 10.118 | 3.721 | 3.160 | 3.259 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC15944 | 482 | 3e-25 | 400 - 459 | 100 | 60 / 60 | plus | ABC15944 |
| Harvest35 | U35_7618 | 482 | 3e-25 | 400 - 459 | 100 | 60 / 60 | plus |
Contig Sequence (482 bp)
>U35_7618 482 Hv_44K_v2 CGAGGTGTATCTTGGCCGCCCGTGGAAGGCCTACTCGCGGACCGTCGTGATGGGGAGCTC TCTCGACCGTTGGATCGCCCCGGCCGGGTGGCTGGAGTGGTCGGGCCAGTTCGCCCTCAG CACGCTCTACTACGGGGAGTACGGGAACACCGGGCCTGGCGCCGGGACAGGCGGGCGGGT GAAGTGGGCCACGTCAATGTCCACCGTGGACGCCACGCGGTTCACGGTGCGGGATTTTAT CTTGGGAGACTCATGGTTGGGTGACACCGGAGTGAGCTACACTTCGGGGCTATGACTGAT TAAGATGGTGTCATGTTGCCACTGCTCTGTTGATTGATTAACTTGAAACATGGAACCGGA TCACATGTAAGGACTGGATTGGTAACAATAAGACCTGCTAATGTATGAGCTGCCAAGCTG TTGCTGTGCATGTCCCATACTGAAATCTAAACGAGGCTTGTTATTAAAAAAAAAAAAAAA AA
Homology of Contig U35_7618 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |