barSeed - Barley Seed Development Database

Probe CUST_19340_PI390587928

Source Contig U35_7623

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19340_PI390587928	Hv_44K_v2	TCGATGAGACCAAGAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGATGGCAGATGTCC	372	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371077	2282	2e-24	1023 - 1082	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.5	1651	2e-24	380 - 439	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.2	3674	2e-24	2394 - 2453	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.6	1660	2e-24	373 - 432	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.4	2014	2e-24	1072 - 1131	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.1	3792	2e-24	2394 - 2453	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.3	3634	2e-24	2327 - 2386	100	60 / 60	plus	ABC15142
JLOC1	JLOC1_38376.1	2057	8e-25	1169 - 1228	100	60 / 60	minus
JLOC1	JLOC1_38375.1	2080	8e-25	850 - 909	100	60 / 60	plus
Harvest21	ABC17037	643	3e-25	373 - 432	100	60 / 60	plus
Harvest35	U35_7623	643	3e-25	373 - 432	100	60 / 60	plus

Contig Sequence (643 bp)

>U35_7623 643 Hv_44K_v2
TCACTTGGAAGGTTCAAATCTCCCAGCACTACTTGGTCGTGAAGGAAAGTGAGAGGCGAA
AGCAGAGGAGGCCTGTAGCCATGGCCTCCTACGACAAGGCCATGGAGTCGTACAAGAAGG
CCGTCACCACGGCGGCCTCCCTCGCGGCGTCCGCGATGCTGGTGCGGGGCGTCGTCAATG
AGCTGGTGCCGTACGAGGTGCGTGACCTGCTCTTCTCCGGCATGGGCTACCTTCGCTCGC
ACATGTCCTCCCAGCACACCATCATCATAGAGGAGACCGAGGGGTGGGCCAACAACCAGC
TCTACGACGCCGCGCGGGCGTACCTGGCGACGCGGATCAACACCGACATGCAGCGCCTCC
GGGTCAGCCGCGTCGATGAGACCAAGAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGA
TGGCAGATGTCCACGAGGGCACCGAGTTCAAGTGGCGCCTTGTCTGCCGGGACAACTCCA
GCGCCAGCAGCAGCAACGGCAACGGCCGTGGCGGCAGCGGCAATTTCAAGCTTGAGGTCC
GGTCCTTCGAGATGAGCTTCCACAGAAAGCACAAGGACAAAGCCCTTACCTTCTACCTCC
CTCACATCCTCGCCGTGGCCAAGAAAGTCAAGGAGCAGAACAG

Homology of Contig U35_7623 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42030.1	487	2e-75	protein\|mitochondrial chaperone BCS1, putative, expressed
Brachypodium v1_2	Bradi2g42940.1	488	2e-82
Arabidopsis v10	None