barSeed - Barley Seed Development Database

Probe CUST_19338_PI390587928

Source Contig U35_7626

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19338_PI390587928	Hv_44K_v2	GATGAGGATGAGACAGCAAGTTTTAAGGTGTCTTTAAGCTCATGGCCTGGTCAACCATCT	1111	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364134	2161	2e-24	1412 - 1471	100	60 / 60	plus	None
MLOC	AK354378	4429	2e-24	3780 - 3839	100	60 / 60	plus	ABC10365 ABC10837
MLOC	AK359113	2869	2e-24	2304 - 2363	100	60 / 60	plus	None
MLOC	MLOC_20050.1	1369	2e-24	494 - 553	100	60 / 60	plus	None
JLOC1	JLOC1_13906.1	2046	8e-25	1093 - 1152	100	60 / 60	plus
Harvest21	ABC17606	1176	3e-25	1112 - 1171	100	60 / 60	plus
Harvest35	U35_7626	1176	3e-25	1112 - 1171	100	60 / 60	plus

Contig Sequence (1176 bp)

>U35_7626 1176 Hv_44K_v2
GGCGCGCGCAGGCAGGCCGGCGTCCATGGGGGCTCGCTGCTCCAAGCTCTCCGCCTGCTG
GTGGCCGCCGCACTTCAAATCGCCCCGCCTCGAGAACGGCGCCGCCGGGGAGGACGGCAG
CGGCGTCCCCGTCTTCGCGGAGTACAGCCTCGACGAGCTCCGCGCCGCCACCGACGGCTT
CGCCACGGACCGCATCGTCTCCGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGG
CACCCTCTTCAGCTCCGGCGCCACCGTCGCCATCAAGCGCTTCGGCCGCTCCGCCTGGCC
CGACGCGCGCCAGTTCGTGGAGGAGGCCAGGGCCGTTGGGCTGCTGCGGAGCGGTCGCCT
GTCCAACCTCATCGGTTGCTGCTGCGAGGGCGGCGAGCGGCTGCTCGTCGCCGAGTTCAT
GCCGCATGATACCTTGGCAAAGCATCTCTTCCACTGGGAGACGAAACCATTGAGCTGGGC
AATGAGGGTGCGAGCTGCACTCTATGTGGCCCAAGCACTGGAATACTGCACCCTCAAAGG
GAGGGCTCTCTACCATGACCTTCATGCATACAGGGTCCTCTTTGATGTGGATGGCAACCC
TAGATTGTCATGTTTTGGTTTGATGAAGAACAGCAGAGATGGGAAAAGCTACAGTACCAA
TTTGGCTTTCACACCTCCTGAGTATCTGAAGACAGGTAGAGTAATCCCTGAGAGTGTGGT
CTACAGCTTCGGTACCATCTTGCTTGACCTCTTAAGTGGAAAACACATTCCACCAAGCCA
TGCCCTTGACCTTATCAGAGGAAGGAACATCACTGTGCTCATGGATTCTTGCTTGGAAGG
TCATGTCTCCAGTTCTGATGGAACTGAAATGGTGCGGTTAGCATCCCGCTGCTTGCAATA
TGAAGCTCGTGACCGGCCAAACCTGAAAGCAGTAGTGTCTGCTCTTGCAAGCCTTCAAAA
AGACGCTTCGGCTCCTTCACATACTTTGCTGGGCATCTCACAGGATGCGGTCAAGGAGAA
CGCAGAGCAAGTTTCATTTTCTGCTACTGAGAAAGCTTATGCGACAGCAAACCTTGAGCA
GGTGCATGAGTTGCTGGAAAATGAGGGATATGATGAGGATGAGACAGCAAGTTTTAAGGT
GTCTTTAAGCTCATGGCCTGGTCAACCATCTGAGAG

Homology of Contig U35_7626 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g61010.1	489	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi1g03420.1	493
Arabidopsis v10	AT5G59010.1	489	Protein kinase protein with tetratricopeptide repeat domain \| chr5:23820578-23823099 REVERSE LENGTH=489