barSeed - Barley Seed Development Database

Probe CUST_19332_PI390587928

Source Contig U35_7633

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19332_PI390587928	Hv_44K_v2	GCAGACCGCCGACGATGACTTCTAAAAATTTCCAATTTCTTTGGAAAAGTCATAAATATA	858	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249977.1	1662	3e-22	1584 - 1643	98	59 / 60	plus	ABC15625
JLOC1	JLOC1_36019.1	1521	1e-22	1461 - 1520	98	59 / 60	plus
Harvest21	ABC15625	920	3e-25	3 - 62	100	60 / 60	minus	ABC15625
Harvest35	U35_7633	920	3e-25	859 - 918	100	60 / 60	plus

Contig Sequence (920 bp)

>U35_7633 920 Hv_44K_v2
CCCCGGGCCTGCAGGCAAATGTAATTAGAGGCGCAGATGAGCATGGTAGGCAAATGGACG
GATACACAGAGAAATCTGACGAGGATGAGCTGGTTTCGCCTGAAGTCGTTGAAGTCGTCG
AGCAGGCAGAGTCGAGGGATTCTATCTTCAAGGTTTGGGATCTAGATGTGTCGTTCTCCG
AGGACGAGAGCGAGCTCGAACTCATCAAGGACCTCAAGAAACTCCTCAGGGGCAACCCCC
AGGAGGTCGCATATCCACCTCCTGGTGACGCGGCCCAGGCTCTGAGCAAGATAAACATTG
ATGAGCTTGTGGCAGGCTTGAGTAACTTGTCACTGCAGCGAACCAGCGGGTAAAAGTTTA
TTCTGGGTTCTCATGATCCTCTGCATTTCGGTCGTCCAATGGTGAATGTCGTGGCAGCAA
ACCAGTGGTTTATTAAAATGTAAACAGAGTGTTTTTTGGCAGGTGGTCCTCTGTGCATCT
TGACCATCCCGGTGGTGATGTCAGTTGCAGATTACTTCTTTAGACTTAAGACTTAGGTTG
ACTGTTTCGATATTGGTTTTGTATATTGTCTGGGCACCCTTAGAACATGCCGTATGAATT
CAGTTCAAGCGGATCTTGGAGAGCTCTACAGGAAGGATGCATAATTAAAGTTCAAGCAGA
TCTTGGAGAGCTCTACAGGAAGGATGCATAATTAAGCGTCTACCCTCTATAAATATGCAT
CGGAGCTTCGAAAAAAATGATTTGTTTTTCTAAGCACCTTTCCTGAGCATCTTGTATTGA
CAGAGGCTCCCTCTGCTGATTGACCTGGGGCAAGGTCCATTAATACTGCTTGTATGTTCT
GGGTTGCTCGTTTTGACTGCAGACCGCCGACGATGACTTCTAAAAATTTCCAATTTCTTT
GGAAAAGTCATAAATATAAA

Homology of Contig U35_7633 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None