barSeed - Barley Seed Development Database

Probe CUST_19329_PI390587928

Source Contig U35_7637

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19329_PI390587928	Hv_44K_v2	CCCTTTGTTGCTGATATGGACCTGTGATGTATTTACCTACATGGTCGTCGCTTTAAAAAA	664	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.050	0.145	0.779	2.265	1.919	2.517
Raw	83.380	380.766	1786.273	7383.447	2486.663	3488.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10188.1	806	5e-22	742 - 796	100	55 / 55	plus
Harvest21	ABC15899	735	3e-25	665 - 724	100	60 / 60	plus	ABC15899
Harvest35	U35_7637	735	3e-25	665 - 724	100	60 / 60	plus

Contig Sequence (735 bp)

>U35_7637 735 Hv_44K_v2
GCTCACTCCAAATCTTGGGACAGAAAGGCCACCGTACTGAAATAGGGATTGACAGAGGCG
GGGCGGGAACCAGCGAGCGAGCGAGCGAGCTCGGCCGGAATCCGGTCCGACGAGATGCTC
AGGAAGCGGCAGAGGAGCATGCTGATGCGCCGGACGACCAGCCTGGCATCCACGCCGAGG
CAGGTGCGCCAGGTGGGCGGCGACGGCAAGCAGGCACGCGCGCGGCCGATCTTTTATGTG
TCGGCTGACACCGTCGAGATGGGTGCCGCCTATGTGAGGAGGGACGCCTTTTCCGGGCTG
TTGGTGGCGGCGGCGTTCCTGACGGCCTGCGGCATCTGCAGCAAATCCCTCCGCGGCATA
GACATATACATTTACAGGGGCGAGTTTTCATTCTGCAGCGATGAGTGCAGGGAACAGTAC
ATCGAGATGGAAAAGAAGTACATCCGCACATCCAGCAGGAAGGCCCCGTCGGACCAGTCC
GGCAGCAGCTGCGGCCGCGGCTCGTGCGGCGGGCCGGGCTAACTCATTAGCTTATACTAG
CCCCTAGTGATGTGCCATACATATATGTGGTACAATCTCCACCATGTTTAAACCGTCCGT
CCATGTATACAACATAGTCTCGAATAATGGTCGGTTTCATCCCTGTTCCATGAGTCAGTT
CCACCCCTTTGTTGCTGATATGGACCTGTGATGTATTTACCTACATGGTCGTCGCTTTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_7637 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None