barSeed - Barley Seed Development Database

Probe CUST_19326_PI390587928

Source Contig U35_7640

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19326_PI390587928	Hv_44K_v2	TGGGTGGATTAACTTCTTTACCCTGTTTCTTCGAGGCAGAAGTGCCTGCTTAAAGACATA	1224	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.204	1.514	1.086	0.757	0.331	0.420
Raw	1070.542	2050.258	1307.910	1432.609	221.507	302.712

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8070.1	1026	4e-23	858 - 918	98	60 / 61	plus
Harvest21	ABC16267	1284	3e-25	1225 - 1284	100	60 / 60	plus	ABC16267
Harvest35	U35_7640	1284	3e-25	1225 - 1284	100	60 / 60	plus

Contig Sequence (1284 bp)

>U35_7640 1284 Hv_44K_v2
GCTTCAGTCTGCGGAGCCTTTTCTATTGAAGCTAGCCCTGCTGTTGCAATATACACATGG
CTCGCATGCTGGTTCCTGTCTGTATTCACATTGATGCCAGCTGAAATTCCAGAGAATAAC
AACTTAGTAATTTTTAGCGGGGCACTTATAATATTGATCGCAATGGCTTCGAGATGGGCG
ACCATCAATACCAGCACCTTTTGGTTGTATCTTAATCGAGCAAACAAACAAGCCCCTAAA
TCCTCCAAGCTATTTTTTGTTCAGGTTATTTTGATCTCAGTGTCTTCAATTATGGTGTGG
TTAACTACATCTCATCGGTCTCAGCACAAAGAACTGCACCCATTGCACCAGTTGATCAAC
TGGTGCGTAGCTGGTTTTGCGATGGTGCTACCGCTCTTTTCACCTTGTAGCGTTCTATCC
CGTCTTACATCTATCTTCTTGGGTTTTGCCCCTTCGTTTCTGCTGCTTTCTATTGGCTAT
GAAGCGGTTTTCTATAGTGCTTTTGCGCTGGTACTCATGGGATGGATATTTCTTGAATCT
GCCAACTTGTATTGCTCTGAAGGAAGCAATTCTGCGTGCTACAGTAGCCTTGTGGATGGA
TCAGTTTATGGCTATGACGAAAGATGCTTACAACTATCTGATTTACGAATCCCTCTGTTA
TTTATGATCTTATTCAATGTTGCTTTCTTTGGAACTGGTAATTTTGCAAGCATTGCAAGC
TTTGAGATATCATCTGTGTACAGATTCATCACAATATTTAGTCCATTTCTTATGACGGCA
CTTCTGATTTTCAAATTGTTCATTCCATATATGCTTGTCATATGTACATTTAGTGCCATA
ACCAAGATTGTAAGGATTCCACGTATCGGTTGTTATTTTCTTGTAATACTGCTTTCAGAT
GTGATGACAATTCATTTCTTTTTCCTGGTCCAAAACACAGGGAGCTGGATGGAGATTGGC
AACAGCATTAGCCATTTTGGAATTGTAAGTGCGCAAGTAGTCTTCGTGTTGCTGCTTTTT
GCACTCACAAACATATACACAAAAGATATCGAAGTCTCGTCTCGGCAATTGACCTCACGA
AAATTTATGTGAATTGACCTGACTTTTTTTAATATGGATTTTGCAGAATGTATCCATTTT
TGTAGAACTAACTTCTGGCCTTTGTTTTATATGTGGCCCAAGTTTTGGGACTAAGCTCTT
GTAGTTTATGGATGTTCATTGTATTGGGTGGATTAACTTCTTTACCCTGTTTCTTCGAGG
CAGAAGTGCCTGCTTAAAGACATA

Homology of Contig U35_7640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37050.1	914	0.0	protein\|phosphatidylinositolglycan class N family protein, expressed
Brachypodium v1_2	Bradi3g47034.1	979	0.0
Arabidopsis v10	AT3G01380.1	993	1e-147	transferases;sulfuric ester hydrolases;catalytics;transferases \| chr3:144288-149828 REVERSE LENGTH=993