barSeed - Barley Seed Development Database

Probe CUST_19325_PI390587928

Source Contig U35_7641

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19325_PI390587928	Hv_44K_v2	GAAAAGAGCAGGCAGCGTCTCTTTCCATTGCTTTCTAGCGACACCTCCGGCTCCGACCTT	146	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67213.1	2173	2e-24	457 - 516	100	60 / 60	plus	ABC00068
JLOC1	JLOC1_44348.2	2790	8e-25	450 - 509	100	60 / 60	plus
JLOC1	JLOC1_44348.1	2335	8e-25	451 - 510	100	60 / 60	plus
Harvest21	ABC31399	609	3e-25	131 - 190	100	60 / 60	plus
Harvest21	ABC30146	240	3e-25	109 - 168	100	60 / 60	plus
Harvest21	ABC17883	571	3e-25	147 - 206	100	60 / 60	plus
Harvest35	U35_31241	609	3e-25	131 - 190	100	60 / 60	plus
Harvest35	U35_30299	240	3e-25	109 - 168	100	60 / 60	plus
Harvest35	U35_7641	645	3e-25	147 - 206	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_7641 645 Hv_44K_v2
CTTCGTTCGTTCCAGCCTCTACCCAGACCGTTCCGTTTCTTACTACTGCGCAGATCAACA
ACAGCTTCCTCTCTTCTCTTCTTCCCTCTAGCTACTCGGCTGATTCCTTTGATCCATCGT
CCGTTCGTTGCATCGTCCGGTCGCAAGAAAAGAGCAGGCAGCGTCTCTTTCCATTGCTTT
CTAGCGACACCTCCGGCTCCGACCTTCCATGGCCATCGCCTCCCGCATCACGAAGCGCGC
GCTCTCCACCTTCGCCGCCGCAGCCAAGCTCCCGGAGGCGGCCGTCGCGGCCGCCGGCGC
CGACGCGGTGCCCGTGCCTTCGTCCGCACAGCAGCAGCAGCAGCACCAGGTGCTGGAGTT
TGAGGACACCGGGAGGCTCTTCACCGGGGAGCCGTCCACGGCTCTGGTGCGCACGCTCGC
GGCGCTGCAGCTCATGTCCGCGGGCCCGCTGGTGGACGTGGGCATCGCGGCGCTGCGGTC
TCCGGCGGTGGCCGCCAGCCCCGTGGTCCAGGCCGCGGCGCGGGCCACGGCGTACAAGCA
CTTCTGCGCCGGGGAGACCGCCGATGAGGCCGCGGCCCGGGTGCAGCGCCTCTGGCGCGG
CGGCATGGGCGGGATCCTCGACTACGGCATCGAGGACGCCGAGGA

Homology of Contig U35_7641 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None