barSeed - Barley Seed Development Database

Probe CUST_19321_PI390587928

Source Contig U35_7645

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19321_PI390587928	Hv_44K_v2	GCCTTGCGGGGCTGTCTGCTTTGTACAATTCATTTAAGAAAATATGGCAGCTTCAAAAAA	787	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.283	1.358	1.147	0.935	0.399	0.430
Raw	1928.933	3094.227	2329.777	2968.096	451.956	525.638

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13289.3	1431	9e-22	1364 - 1418	100	55 / 55	plus	None
MLOC	MLOC_13289.2	1332	9e-22	1214 - 1268	100	55 / 55	plus	None
JLOC1	JLOC1_8978.4	1399	5e-22	856 - 910	100	55 / 55	plus
JLOC1	JLOC1_8978.3	2244	5e-22	1701 - 1755	100	55 / 55	plus
JLOC1	JLOC1_8978.2	1730	5e-22	1187 - 1241	100	55 / 55	plus
JLOC1	JLOC1_8978.1	1636	5e-22	1093 - 1147	100	55 / 55	plus
Harvest35	U35_7645	858	3e-25	788 - 847	100	60 / 60	plus

Contig Sequence (858 bp)

>U35_7645 858 Hv_44K_v2
CAGCATTTTTACTGTTTGTACTAGCTCAAAATATCTTGGAAGCAGAGGGGCCATGGTTTG
ACAGTTTTCTTATTAATGCCTCCTATGTATTTATGTGTGAAGTACTTATTGATGCTATCA
AGCATTCATTCCTTGCAAAATTTAATGAGATAAAGCCAGTTGCTTATTCAGAGTTTCTGG
AAGACTTGTCGAAGCAGATATTGAATGAGCAACCTGATGACCGTCAGAAAGATCTAACAT
TCATCCCCCTTGCCCCTGCTTGTGTGGTAATTCGTGTGCTGACTCCAGTGTATGCCACCC
TCCTTCCTGCTGGGCCGTTTATCTGGAGAATATTCTGGATCCTGCTCTGGTCAGTTCTGA
CCTATTTTATCCTCGCCATCTTCAAGATACTAGTGGGATTGATACTGCGTTGCCTCGCGA
GTTGGTACATAAATCTACGCCTCACAAGGAAACAACATGCGGACTGAGCACGCAACACCG
TAATCCTGGTGTTAAGATGACAGCATTCTTGAGAAGACAATTTGATGTGGTGCGTGAAGT
ACAGCGAGCAACTGCCGCATCGACCGTGAGTTCGGTCACCTTGCCCATATGACAGAGATC
TTGATAGTGTTACAGCACAGATGAACATGACAAACATATCTTCTTTTTTCAGCAAACCGT
TTTGTCGATTCAAGGAACTAGGCGTAGTCCAATTTTGCCGTGTTTACAACATCTTTCTGT
CATCCTTCTGTGGATAGTTCATTTCATCCTAAAGTTATCTCATCAACCTAGAGAAGATTC
TTGTAAAGCCTTGCGGGGCTGTCTGCTTTGTACAATTCATTTAAGAAAATATGGCAGCTT
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_7645 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50730.1	595	4e-93	protein\|transmembrane anterior posterior transformation 1, putative, expressed
Brachypodium v1_2	Bradi1g10710.1	593	2e-95
Arabidopsis v10	AT1G67960.1	624	6e-56	CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). \| chr1:25480808-25484176 REVERSE LENGTH=624