barSeed - Barley Seed Development Database

Probe CUST_19320_PI390587928

Source Contig U35_7646

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19320_PI390587928	Hv_44K_v2	TTAACATGTGTGTTCGTCTCTGCTATGTGAGCTCTGTATCGGAAGGTGTTCGATAAAAAA	1014	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.076	2.592	1.065	0.816	0.228	0.292
Raw	253.658	515.470	178.025	222.200	20.994	29.951

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45065.1	1404	9e-22	1030 - 1084	100	55 / 55	plus	ABC35388
JLOC1	JLOC1_29247.1	1328	5e-22	1029 - 1083	100	55 / 55	plus
Harvest21	ABC35388	512	3e-25	442 - 501	100	60 / 60	plus	ABC35388
Harvest35	U35_7646	1085	3e-25	1015 - 1074	100	60 / 60	plus

Contig Sequence (1085 bp)

>U35_7646 1085 Hv_44K_v2
TCTGCAGAGAGCCCCCTCTCCCTCCTCCCCCTCTTTTTCACCAAAATCTCCGTTTCGTTC
GGTGTCTTCTCCCTCTCTCTCTCTTCGCCCCGGCATTTTTGCTCCCCCCACCCCACACCC
CGATCGTACGGATTTGCTCTCCAGTGGGTCCCGCAGCACCCGCACAACTCCTCTTCCTCT
GTACTCTAGCCTTTTAAACCAGTTTCCTTTTTCCTCCTCATATTTTCCTCGTCCCCCTGC
CGCTATCGGCGATCCCGTCCGGCCGCTACAGTCGTGGCGGAGGGGCGCGTCGGGATGTCG
ATCTGCGCGAGGATGGACGCGCCACGCGGCGGCGCGCTGGGGAAACGGAAGGAGCGGGAG
TACTCGTCTTCGTCGGAGCAGCGGCAGCCGCTGTTCCCGCCGCCGCCCGGCAAACCGGAG
CTGCTGCGCAACAAGCCGCACCAACTGTCGCGGTTCGCCAACAAGCCTCCCATGCCGACG
CCGCCTCCCCAGGAAGGGAGCAGCAAGCTGCTCGCCGGGTACCTGGCGCACGAGTTCCTC
AAGTTCGGCACGCTCCTCGGGGAGCGCCCCCCCGCGCCGGGCCGGAAGGAGACCGCCACG
CCGCGCCCCGCACCCGGACCCGACCCCGCGAGGAGGTACGCCGAGGCGTCGATGCTGCTC
ATGGCGGGCGGGACCCGCATCCCCGGGGTTGTCAACCCGACGCAGCTCGGCCGCTGGCTC
CGGATTAAGGAGTGATGGAGGCACGCGCCCGGCGGCGGTTCGCGTCCAGGTGCGTACCGC
GTGCACGGCTCCCGAGGCGCCCGACCCGGCGGCGATGAACCCATGCTTTTGGACATAGCA
AGTGGTGGTGGTTACTTTGCCCAGATCCTTTTCCTTTTTCTATTTTCAGGTTCTAGTTGT
TTCGTTTTAAAAATTTCATGTAGATTTGGTGAGAAACTAGCGGTACTAGAATTTCATGGG
GTAGTAGTAGTACTACTACTATGTGTGTTCGTCTCTACTAATCGTGAGTACTTGTTAACA
TGTGTGTTCGTCTCTGCTATGTGAGCTCTGTATCGGAAGGTGTTCGATAAAAAAAAAAAA
AAAAA

Homology of Contig U35_7646 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None