barSeed - Barley Seed Development Database

Probe CUST_19319_PI390587928

Source Contig U35_7647

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19319_PI390587928	Hv_44K_v2	GGCTTCTTATACTGTCAGTACTACTACATGCGAAATTTGAATTTTTTGTTACTCCTGGAA	798	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.470	3.127	0.573	0.483	1.148	0.953
Raw	36.075	34.090	3.767	5.011	4.329	3.363

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC16125	874	3e-25	799 - 858	100	60 / 60	plus	ABC16125
Harvest35	U35_7647	874	3e-25	799 - 858	100	60 / 60	plus

Contig Sequence (874 bp)

>U35_7647 874 Hv_44K_v2
GTCACGCCCCCCACCCGCAACCTCACTCGACCAGGCCAGAGTAGCTAAACGGCTGATCCA
TCCATCCATTCGGTCTCTCGCCTACGTTCTAGCGAGGCAGCCAGGCCAAAGCAAAGCACC
ATGCTCGGCCTCCGCGTCCTCTGCAGCGCGCCACCGGCACCGCCGGCGAGGGGCCGCTGC
AGCACGCCGGAGAAGAGCGGCCGGGCGTTCCTGCTGGGCGTCCCCGCCGCCGTCTCCCTC
TCGCTCGTCCTCTGGTCCACTCCAGTGAGCGCCGGCATCCTGTCAGGGTCCACCGGGCTG
GAGTCCATCCCAGCACCCCCGTTGCCCCGGCTCGAGTTCTTGGACAAATGGAATGCGGAG
AACCAGAGGAAGTACGCGGAGAACGACTCGAGGTTCAAGTCCTCCAAGGTGCTCAGGGAG
CTGCTCCAGAAGTCCAAGCAAAACAAAGAGAAGAACGAGAGGGAGATCCAGGACAAGTAC
TGCCTGCGGGGCGCCGAGTGGGGCGTCGGCGACTGCTCCACGGTGGGGATGACGGACCAG
GAGAAGGAGGACTTCATCACGGAGCTCAAGAAAAGGGTTGGAGAATGAGCACACGCATCA
CGGAGCTCTCCGTTGTTCGCCAGGAACACAGAGAGTTGTGGCACTGCATATAACTGCTTC
TTGCCACAGCGGCAGGATCTAGTGGCAGCATAGTCGCTAGAGAGTGAGAGATTGGACTTG
AGGGGGGGAAGGAACACTAGACAGATACACAGTTTAGTTCAGAATTGCAGATGGTTTAAA
AAGGTGAATGGGAGTAATGGCTTCTTATACTGTCAGTACTACTACATGCGAAATTTGAAT
TTTTTGTTACTCCTGGAAAAAAAAAGAAAAAAAA

Homology of Contig U35_7647 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11230.1	171	4e-71	protein\|expressed protein
Brachypodium v1_2	Bradi1g70420.1	159	9e-79
Arabidopsis v10	AT2G03420.1	170	3e-53	unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:1035100-1035937 REVERSE LENGTH=170