barSeed - Barley Seed Development Database

Probe CUST_19316_PI390587928

Source Contig U35_48149

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19316_PI390587928	Hv_44K_v2	CCACGTGATGTGTCCGTCTCACCGTGTCACTGTGCGAGCTACATTGTGGTTCATAAAAAA	10	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.176	0.191	0.539	2.189	1.775	2.421
Raw	3.454	6.377	22.213	151.506	37.978	56.324

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_48149	433	3e-25	11 - 70	100	60 / 60	minus

Contig Sequence (433 bp)

>U35_48149 433 Hv_44K_v2
TTTTTTTTTTTTTTTTATGAACCACAATGTAGCTCGCACAGTGACACGGTGAGACGGACA
CATCACGTGGAGGCGGCGAGTACGTGTGCCATGGCGGCTCCGTCGCCGCCCCCTCGCACG
TCCACGCTACGTACAACGTACGGTACACAACGGAGACAAAGTGTCGTCGGTCCTTGAAAT
CTACTACTAGCTCGACTTGGCGAAGCGGCCGTTGATCCTCACCCTGCCGTCGGCGCGGGC
CTTGCGCGACTCGTACCGGATCTGCTTCCCGAACATCCTGTTTTTCCTCTTCTCCTTGTA
GCGCGAGATCACCTTGTCCCGGTCAGGGTAGACCACGTCGTAGCCGCCGACGTTCTTGCT
CGCCTGAGCTGGTGGCGCTTCCGCCTGCACTGCCACTGCCGCTGCCGGCGACGGGTGATC
GTGTCGTCCGCCG

Homology of Contig U35_48149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None