barSeed - Barley Seed Development Database

Probe CUST_19315_PI390587928

Source Contig U35_24190

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19315_PI390587928	Hv_44K_v2	GCTTCGGTGATTGTGTTTTGTATGAAATTTGCAACACCAGAGTTGACAAAGATAATTCTG	635	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249000.1	2110	7e-23	2012 - 2072	98	60 / 61	plus	ABC23705
MLOC	MLOC_4902.1	1657	7e-23	1542 - 1602	98	60 / 61	plus	ABC23705
JLOC1	JLOC1_3109.1	1755	4e-23	1543 - 1603	98	60 / 61	plus
Harvest21	ABC23705	716	3e-25	22 - 81	100	60 / 60	minus	ABC23705
Harvest35	U35_24190	716	3e-25	636 - 695	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_24190 716 Hv_44K_v2
GGCATTGGACTAGTGCTTTCCATTTTTGCAATGGTGTCTGCAGCTTTTGTCGAGGTGAAG
CGCTTGGAGATTGCCAGGTCCGAAGGTCTTATCCATGAGAAGGCTGCGGTTCCGATGAGC
ATTCTTTGGCAAATACCGCAGTATTTCTTTGTTGGCGCTGCCGAGGTTTTCACTAATATA
GGTCAGCTTGAGTTCTTCTATGATCAGGCCCCAGATGCCATGAGAAGTTTATGTGCTGCA
TTTGCGCTCGTCACGGTCTCAGCAGGGAGCTATTTAAGCTCATTCATATTGACCTTGGTG
TCTTACGTTACAACTCGAGGTGGAGATCCTGGATGGATCCCGGATAACCTGAACGAAGGC
CATCTTGACCGGTTCTTTTGGTTGATTGCAGGGGTCAGCTTTGTGAATTTGCTGGTTTAC
ATCAGTTGTGCAATGAAATACAAATATAAGAATGTGTGATGGTTTATCTCCACAAAAATG
TGTGATGGTCATACCTGCTGTGGAATCAGTCCTTGTAATCTCAGATTCCAATATCCATGA
AAGCTGTGCATTTTATAGACTAAGACATCACATGAGCTGGCCCTCTCAACAGGTCCTCAA
GAAAAAGACTTCTGGTGATGTATTTTAGACAAATTGCTTCGGTGATTGTGTTTTGTATGA
AATTTGCAACACCAGAGTTGACAAAGATAATTCTGTACATGCATATCCAATATTTC

Homology of Contig U35_24190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13240.2	541	2e-78	protein\|peptide transporter, putative, expressed
Brachypodium v1_2	Bradi1g68860.2	589	3e-89
Arabidopsis v10	AT2G02040.1	585	3e-59	\| Symbols: ATPTR2-B, NTR1, PTR2-B, PTR2, ATPTR2 \| peptide transporter 2 \| chr2:487542-489707 FORWARD LENGTH=585