- Probe CUST_19313_PI390587928
- Source Contig U35_24192
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_19313_PI390587928 | Hv_44K_v2 | AATGCTCCTTGTGCTCGCTGACGCCTACAGCACATTCCTGTCAGCGCTTGTCACGCTCAA | 1 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_48736.1 | 3979 | 2e-24 | 720 - 779 | 100 | 60 / 60 | plus | ABC34591 |
MLOC | MLOC_48736.3 | 3207 | 2e-24 | 685 - 744 | 100 | 60 / 60 | plus | ABC34591 |
MLOC | MLOC_48736.2 | 3205 | 2e-24 | 720 - 779 | 100 | 60 / 60 | plus | ABC34591 |
JLOC1 | JLOC1_31271.2 | 2997 | 8e-25 | 2259 - 2318 | 100 | 60 / 60 | minus | |
JLOC1 | JLOC1_31271.1 | 3015 | 8e-25 | 2277 - 2336 | 100 | 60 / 60 | minus | |
Harvest21 | ABC21729 | 465 | 3e-25 | 2 - 61 | 100 | 60 / 60 | minus | |
Harvest35 | U35_24192 | 467 | 3e-25 | 2 - 61 | 100 | 60 / 60 | minus |
Contig Sequence (467 bp)
>U35_24192 467 Hv_44K_v2 CTTGAGCGTGACAAGCGCTGACAGGAATGTGCTGTAGGCGTCAGCGAGCACAAGGAGCAT TTCGAGGATTTGGTCACAGGCGGTGGCCGCGGCGGCGTGGAGTGCTGCCACAGCCTGCGG CAGCGCCAGGAGCTCACCGAGTGCTGCCAGGGTGGCATCGACGAGGGCGATGCCGGATGA CTGACCGGCAGCCCCTCTGGCCAACCATGACCGGAGCGCGTGGATGCTGTCGTCTAGGTG CGCCAGGACGGGGTGCGGGTGTTCGTGCGGCAAGCTGGCCGACCGGGCGTGCGCCGTGGC AGCCGTCGTCTTCCCCGCTGCTCTGATTGCTGGATGCATCCTGTGTCTTGCGATGAATGC TGCTCTGCGATTGGTATGCTGCGGCTGCTTGTCTCGTCGGTTTCTCGATGCTTTTGTGAG TGGAGCTCCAGTATGAACGGGGCAGCCTATAAATGGGAGTACTGTAG
Homology of Contig U35_24192 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |