barSeed - Barley Seed Development Database

Probe CUST_19300_PI390587928

Source Contig U35_36173

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19300_PI390587928	Hv_44K_v2	GTTACATACCATATCACGGTTTGCATGCACTGATGTGCTGAAAGCCTACCAACTGTACTT	458	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69561.2	3455	2e-24	1895 - 1954	100	60 / 60	plus	ABC12925
MLOC	MLOC_69561.1	3197	2e-24	1839 - 1898	100	60 / 60	plus	ABC12925
JLOC1	JLOC1_46097.1	3102	8e-25	1671 - 1730	100	60 / 60	plus
Harvest35	U35_36173	518	3e-25	459 - 518	100	60 / 60	plus

Contig Sequence (518 bp)

>U35_36173 518 Hv_44K_v2
TATAGGGCGAATTGGGCCCTCCTCAAAATGCTCGAGCGGCCGCTGCTTTACCATTCAGCG
CCTGTCGTCGACGCAGATCACCTTGTGCGGGAGATGATGGACAAGGTCTTGCTATGTGAC
GGGGAGACATGCTCTAGAGGTGTCAAGGAGCTGCGTGAGGCCCTGCAGCACGATGTTGCA
AATCATTCAGGTGCTGCCCATGGCAAAGGGTCTGGCCATGGCAAGGGCCGTGGCAAGAAA
CAAGTCAAACAACCCAAGAAGGAGGTGGTCGACTTGGGGACTCTCCTCATTCATTGTGCT
CAGTCCGTGTCCATTGATGACCGGCGGTGTGCAACCGATCTCCTGAGGCAGATCAGGCAG
CATGCATCTGCCACTGGCGATGGTGACCAGCGTTTGGCACACTGCTTTGCCAATGGCCTT
GAGGCGAGGCTTGCTGGTAATGGAAGTCGGATTTACAAGTTACATACCATATCACGGTTT
GCATGCACTGATGTGCTGAAAGCCTACCAACTGTACTT

Homology of Contig U35_36173 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62460.3	706	2e-60	protein\|ZOS1-16 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi2g54670.2	806	5e-67
Arabidopsis v10	None