barSeed - Barley Seed Development Database

Probe CUST_19294_PI390587928

Source Contig U35_48150

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19294_PI390587928	Hv_44K_v2	GAGCAAGAAAACATATGCCGAAATTTGTTGTGCAATACATACGTGAGACGTGAGAAAAAA	11	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.014	3.148	0.815	0.799	0.839	0.937
Raw	25.291	43.111	9.408	12.804	3.750	5.493

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3626.1	1361	1e-22	1068 - 1123	100	56 / 56	plus
Harvest35	U35_48150	459	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (459 bp)

>U35_48150 459 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTCACGTCTCACGTATGTATTGCACAACAAATTTCGGCATATG
TTTTCTTGCTCTTGGCGTTTCTATACGTAGTAGACGCTGCGAAGGGCGAACCGAAGAATT
TCACATGGGCTTGAAGTTTCTGTACGAGATGACGGCGTAAAACGGGTCGGAGTTGGCCTG
CCCGAACAGCCTCATCAGGGCCTCCAGCGGCGACGACGAGCCCGACTTGCCGCCGGCGTC
CGAGGGCGGCAGCCTCCTGACCACCTCCGGCTGCGTGAACCCTTCGATGCACTGGAAGTA
CTGCGTCACGAGCTGGACGCGGCTGTAGGCGGACCCCTCCCGCCACGCGCCGATCGCCTT
CTCGTAGAACATCCGGTTGCTGAAGCTCACGATGCACACCCCGCCAGGCTTCAGCACCCG
GTAGATCTCCGCAAAAACTTGTTCAGGCGACTGCAGGTA

Homology of Contig U35_48150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40530.1	269	3e-60	protein\|methyltransferase domain containing protein, expressed
Brachypodium v1_2	Bradi5g13580.1	270	1e-65
Arabidopsis v10	None