barSeed - Barley Seed Development Database

Probe CUST_19290_PI390587928

Source Contig U35_48155

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19290_PI390587928	Hv_44K_v2	AATGTTGGCTCTTGTTTTTCTGAATGGAATGGACAGATACACGTTGTGATTCTCAAAAAA	11	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.496	2.643	1.263	0.956	0.288	0.422
Raw	76.139	129.127	50.257	60.969	5.292	9.544

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26822.1	304	7e-23	175 - 231	100	57 / 57	plus	None
MLOC	AK359658	1270	3e-21	1217 - 1270	100	54 / 54	plus	None
Harvest35	U35_48155	441	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (441 bp)

>U35_48155 441 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAGAATCACAACGTGTATCTGTCCATTCCATTCAGAAAAACAA
GAGCCAACATTCAACATGTCTCTTCTTCTTCTTCTGTCTCTGATTTTTTTACTTTTTACA
GCCGGACGGATGATCGAAAGAACTCACTCACTCACTCATCTCCCCCGGTTTCGAGGGGAT
TGGGATTGATCGGGAAAACACTCAAACTCAGCGCATCACTGCCTGCCGGCCGAAGAAGGC
GGCGCAAAGCACGGCCAGCGCCGTCGCCGGGAGCTTCCCGGCGGCGAGGCCGGCGAGGAT
GACCGGGACGAACGCCGCCAGGGGGAATTTGAATCTGTCCCCTCGCCTTTCCGTCTCCGT
CTCCGTCTTCATCTCCACCGACGATTCTGTGCTTGGCTCCGACGGCGCCTCCTCTGTGTC
TGTGGTGGAAGTGGAAGGGGC

Homology of Contig U35_48155 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None