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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_1927_PI390587928Hv_44K_v2TTCTATTATGGGGCGGAAGGAGTAGTTTATTGTGTTCATGCTGGCATCCCTAGTAGCCTA1781GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.1571.9761.2630.8290.4770.580
Raw 97.426132.15276.93974.94915.48521.628



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36252745102e-243226 - 328510060 / 60minus ABC14574
JLOC1JLOC1_35501.249538e-251333 - 139210060 / 60minus
JLOC1JLOC1_35501.135778e-251333 - 139210060 / 60minus
JLOC1JLOC1_35500.328318e-251519 - 157810060 / 60plus
JLOC1JLOC1_35500.229088e-251596 - 165510060 / 60plus
JLOC1JLOC1_35500.129058e-251593 - 165210060 / 60plus
Harvest35U35_571523623e-251782 - 184110060 / 60plus



Contig Sequence (2362 bp)

>U35_5715 2362 Hv_44K_v2
CTGGCCGTGAGGCATCAAGAGGCGCCGTGCTCGATCCAAGCGCGGGGCGCGGTTGCACCG
GGAGTTCCAGCTCCGTCAAACCAAGCAAGGCCGCCGACCAGCGGCGTCAGTGCCAAGGTG
GGCCTCGGACTCTGTACGGTGCCTTCGAACGCTGGGCCTTATTATGGGCTTGCGAAGGGC
AGGTGGGCCGAATTGACAGATCAGGGGCTCAGGGCAACACCGAAAAGTGGAGACGCGGGA
CGGCGTGGCGCCAAAAGGAACCCTACCGCGCCGTGCGTCCATCCCCTCCCTCCGCTTCGC
TCCCCCTTTCGCCTCTCCTGCCGGCGCGACGCAGAGGCGGTGCCCCCGGCGACCTTCCCG
GCCTCCCAGGTAAAACCTGGCACTGCATCTCACAGTCAGACAGAGGCAGTTTAACAGAAA
AGTATTAGCTTGGCTGCCTCAGCAGTACCTTGTTGGCAGTCCAGAAGATACTGCAGAAAT
CGTTGGTGTAGAACCAGAACCCAAACCGGTGCCACCAGTAACAAAGCTGAAGGAGCCAAC
GACCACTACTGATGGCATTGTGGTGTGAGAACATGGCGTTGCCGCCCCGTGTTCTTGTTG
CTCCCCGCCCTTCTGGTGCCAATGGCCAAGGGAATTTTCTATTACTTCGCCATCCGAAAC
AAGAAGAAGAAACACAGTATCTGTTCACTGATGGCCAACTTCATGAATTCAGTTGGTTTA
AGGAGCGTTATGGTTCTTGGTTCTTGGGTGATTATGTCTGTGAAGATGGTAGTGTTTACT
ATTGCACGCTTGTTGACCCCATCTTCGTTCTTCTACCACTTTTCGAAGCTGCACGTATGT
TGAACGGTAAGGATCTGGGAAAATTCAGACAGCTGGATGAAATTTTATACGTTGAGGGTT
ATCCTGGATATCAGAACCTCATGAGTATAGCAGGAAAGCATATGGAACTGGTTTGTGAAG
TTAAAGAAGTTGCTAATATGAAATTCTTCAGGCTAGATGATTCCAAGGTCTTAACTTGGC
TGTGCTGTAAGGTAAACAGTATAAAAGAGGCTATCTCCAAGTTAGGTAAAAATTATGCTG
CTCAAGGAGAAAGAGAACTGTTGAAGGAGGCTGTACAAATAATTCGCGAAAACCTGAAGG
GTGAACCTTGGCTAACGGTACTCTGCAAGAAGTTGCAATTAGATATCAATGAGATCAATG
ATATGGCCAAAACCAATGACACGTCATTTTGTGCTGATAGTTCTCCGGTACCTGCTCCAG
CTTGTCCCTCGGAGGGGGGCGTAGGAAATGGCAGTGCCAAATCAAGCAAAGGGAGACCTG
CAAAGAAACTGAAGCCTGAGGTAGGATCAAAGAACATAAAAGACATGTTCCGAAGGGTGA
CAAGGAGTGGGAAATAATCCCGTACCACCTGATATTGTCATCAACACCTCACAAGGTGCT
TGGTATTCTTGGAGTTTCCGGGTTATCTCCAAATTGGATGTGCTGAGATGCCATCGACTA
TTGTTGGTTCTCCCGACCCAGAAACCTGCATTAGTTCTTTTTTGAACCCTGTTGAACTTG
TATTAACTGTAGCATTAGTAAATTAGCATTGTAGGCGTCGATTCGGTTAATTGGACTATG
AACCTTACTGTATTACTGGAATGTGTTATTTGTACCCAATTTGTTAATCTCATTGAGCTA
CTTGCAGAGGCTGTATGCCTGTAACTGAATATCTACAGTTGCTTCAGTAACCTGAGCTGG
TTGTAATCTATACTCCCTTTGTCCCATAACATACAAACATCTTCTATTATGGGGCGGAAG
GAGTAGTTTATTGTGTTCATGCTGGCATCCCTAGTAGCCTAGCGGCCGCTCGGGACGAGC
GCGGAGGCGACCAACGCGGGCACTTCTCTGCTTCCTCGACCTCCAAGGAAGAACTATGAC
AAGGCTATCAAGCGTTTCTTGGTGAGGAACATCGTGGAGCAGGCTGCTGTCAGATATGTG
CAGGAGGCTTGTTTGCATGATGGATATGTTCTTCCCAAGCTGTATGCCAAGGTGCACCAT
TGTGTTTCTTGTGCCATCCATGCTCACATTGTCTGTGTCTGCCCCCGTGAGAACAAGAGG
AACCGTGAGCCCCGCAGCGCTTCAAGCGCAGGGGCCACCGTGGAAGCCTATGGAAGGTTG
TTTCATATGACTAGAGTAGGAGCCCAGTTTGCACCAATCGTCATTTTATCTGTGTAACTC
TATGTAACTGATTGTATTTGTATGTGTGTCATATGACTATAGCAGGAGCTGATTATACAC
TTGTAGAGCTTGTAACTTCGATTGTCATCGTAACTCTTTATATTATGTAACAAAATGATC
TGGCTAAAAAAAAAAAAAAAAA



Homology of Contig U35_5715 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g40050.12803e-147protein|ribonuclease H2 subunit B, putative, expressed
Brachypodium v1_2Bradi5g13357.12823e-176
Arabidopsis v10AT4G20325.12771e-78FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10980124-10982426 FORWARD LENGTH=277