barSeed - Barley Seed Development Database

Probe CUST_19271_PI390587928

Source Contig U35_48164

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19271_PI390587928	Hv_44K_v2	CCTGAAGGTTAAAACAAGCTGTCCGTTATAGAGTCTGAAGCATGCTGTTGTTGTAAAAAA	11	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	13.254	6.945	1.524	0.637	0.168	0.213
Raw	1104.173	968.247	173.540	122.076	10.173	15.272

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59924.3	1311	9e-22	1237 - 1298	97	60 / 62	plus	ABC02949
MLOC	AK363491	1591	3e-21	1345 - 1398	100	54 / 54	plus	ABC02949
MLOC	MLOC_59924.1	1686	3e-21	1561 - 1614	100	54 / 54	plus	ABC02949
MLOC	MLOC_59924.2	1561	3e-21	1434 - 1487	100	54 / 54	plus	ABC02949
JLOC1	JLOC1_39038.1	1822	2e-21	1478 - 1531	100	54 / 54	plus
Harvest21	ABC02949	1485	6e-22	1331 - 1384	100	54 / 54	plus	ABC02949
Harvest35	U35_48164	415	3e-25	12 - 71	100	60 / 60	minus
Harvest35	U35_15187	1584	6e-22	1359 - 1412	100	54 / 54	plus

Contig Sequence (415 bp)

>U35_48164 415 Hv_44K_v2
TTTTTTTTTTTTTTTTTACAACAACAGCATGCTTCAGACTCTATAACGGACAGCTTGTTT
TAACCTTCAGGTTGAAGGGAAAAAAAAAGAAGGTGGGGTGATTATCAGGCGGTGGCGCCG
ACGGTGGCGCTGGCGGCGAGTCTGGAGGAGCCGTAAAGGGTCTCCTCGAAGCGGATGATC
TCGTTCTTGGAGCCGTAGGCCACCTGGGTCCGCTCGTCGAGGACGGTGATCACCTTGTCC
AGCACCGACTGCTTGCCGTCGCTGCTGTGCCCGCCGGCCTTCTCTATCAAGAAGGAATTC
ATGCGTCCCGGGGCAGTCCTTGAGGGCGACGACAAAGGTGGTGCGAGGGCCGTAGATGCC
CATGGCGGCAGCAACCTGGTCTCCGCCGGTGACGCCCGTCAGCTTGTCGCCGGGC

Homology of Contig U35_48164 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None