barSeed - Barley Seed Development Database

Probe CUST_19269_PI390587928

Source Contig U35_48166

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19269_PI390587928	Hv_44K_v2	CTGAGCTATGGCGACCATGGTTTGTGATGTACATAATGATCAATGTTTGATGCCAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55658.3	4453	9e-22	4297 - 4351	100	55 / 55	plus	ABC42998
MLOC	MLOC_55658.8	1516	9e-22	1148 - 1202	100	55 / 55	plus	None
JLOC1	JLOC1_35935.1	1863	5e-22	1279 - 1333	100	55 / 55	plus
Harvest35	U35_48166	470	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (470 bp)

>U35_48166 470 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGCATCAAACATTGATCATTATGTACATCACAAACCATGGTCG
CCATAGCTCAGTGGTAAGTGTACAGAGCACCCCGCCTGCGTGCATGAGCATGGCGCACGG
CGCGCTCAGCCGGCCGGCGTTCATCTGCATCTTCTCCTCTCGAGCATCTCGCTGAACTCG
TCGTCGGTGGCCTTGAGCATGTCCGGCAGCGGCAGGTCGACGCCAGCGTCGGCGGCGGCG
CGGTGCCGCGGCGCGATCCGCTTCTCGAGGCTGAAGGTGAAGTACTGCGGGAAGGCCTTG
ACGTCCTCCACGCCGCCGCCCATCTCCTCCACCAGGTACTCGAACTTGGGCTTGTAGTTC
CTCTCCACGTTGAAGGTGAAGAAGGCCGGGCACCGGAGCGCCATGGCCACGGCGTCGTCC
CGCGACATGCCCAGCCCGGCCAGGTACTCCAGCTTGGGCGCCATGGTGCG

Homology of Contig U35_48166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57149.1	311	6e-58	protein\|mTERF domain containing protein, expressed
Brachypodium v1_2	Bradi1g06490.1	314	2e-56
Arabidopsis v10	None