barSeed - Barley Seed Development Database

Probe CUST_19260_PI390587928

Source Contig U35_50484

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19260_PI390587928	Hv_44K_v2	GAGAAAAACTACCCTACGATACACAAAATGCACACAACGCTTATACATAGCTCGAGCGCC	142	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250702.1	1334	2e-24	1216 - 1275	100	60 / 60	minus	None
MLOC	MLOC_19229.1	1014	3e-21	28 - 84	98	56 / 57	plus	None
JLOC1	JLOC1_13342.1	1083	2e-21	928 - 984	98	56 / 57	minus
Harvest21	ABC52649	385	3e-25	143 - 202	100	60 / 60	minus
Harvest35	U35_50484	385	3e-25	143 - 202	100	60 / 60	minus

Contig Sequence (385 bp)

>U35_50484 385 Hv_44K_v2
CTGGCAGCGAAGCGAATTCAGGCGCCAGCAATCATGCTGCGGAGCAAAAGGCGAACGGGG
CCGCCAATGGACTAGCAGTTGACATCGAGCTGTCCAGAACGATAGACGAACTCAGCATCT
CGTAGCGGTCGCTAGGAGGAGGGGCGCTCGAGCTATGTATAAGCGTTGTGTGCATTTTGT
GTATCGTAGGGTAGTTTTTCTCGGCGTGTTAAGACTGGTTGAACGGCAGCAGCATGTAAT
GATGTATATTCTTTGTGATGCAAATGCATTTGTTTTTTCAGAATCGGTTGTGGAACTGGC
ATCTCAGGTTGGCCCTCGTACTCTGTTAGATAGATTTCCCCATCTGATTTTTTTTTTTTG
AAAAGGGGAATATATTGATGTCTTG

Homology of Contig U35_50484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None